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Protocols

GenomeTrafac specifications

Information


Unique identifier OMICS_21102
Name GenomeTrafac
Restrictions to use None
Database management system Oracle
Community driven No
Data access File download
User data submission Not allowed
Version 3.1.2
Maintained Yes

Maintainer


  • person_outline Bruce Aronow

Additional information


https://genometrafac.cchmc.org/genome-trafac/about.jsp

Publication for GenomeTrafac

GenomeTrafac citation

call_split

Characterization of microRNA expression profiles in normal human tissues

2007
BMC Genomics
PMCID: 1904203
PMID: 17565689
DOI: 10.1186/1471-2164-8-166
call_split See protocol

[…] Genomic sequence of miRNA cluster and the predicted transcription factor binding sites were extracted from the "Cis-element clusters within BlastZ Aligments" option at the GenomeTraFac []. Tissue distribution of selected genes was derived from the GNF database [], in which the expression data from the same tissue types examined in our study were extracted for analyses. […]


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GenomeTrafac institution(s)
Division of Biomedical Informatics, Cincinnati Children’s Hospital Medical Center; Department of Pediatrics, College of Medicine, Department of Biomedical Engineering, University of Cincinnati, Cincinnati, OH, USA
GenomeTrafac funding source(s)
Supported by grants NCI UO1 CA84291-07 (Mouse Models of Human Cancer Consortium); NIEHS ES-00-005 (Comparative Mouse Genome Centers Consortium); and NIEHS P30-ES06096 (Center for Environmental Genetics).

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