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Protocols
GenomeVx specifications
Information
| Unique identifier | OMICS_15547 |
|---|---|
| Name | GenomeVx |
| Interface | Web user interface |
| Restrictions to use | None |
| Programming languages | C, C++ |
| Computer skills | Basic |
| Stability | Stable |
| Maintained | Yes |
Documentation
- Documentation: http://wolfe.ucd.ie/genomevx/help.html
Maintainer
- person_outline Gavin Conant
Publication for GenomeVx
GenomeVx citations
(69)Comparative genomics of the wheat fungal pathogen Pyrenophora tritici repentis reveals chromosomal variations and genome plasticity
[…] ndrial genomes were made using Mitos webserver [] and refined based on blast versus http://mitofun.biol.uoa.gr/ protein sequences. Circular visualisation of mitochondrial features was generated using GenomeVx web application (March 2016) []. The dothideomyceta mitochondrial apt8 and apt9 Mycosphaerella graminicola genes were retrieved from Genbank NC_010222.1:c34402-34256 and NC_010222.1:c23405-23 […]
Molecular Phylogeny and Dating of Forsythieae (Oleaceae) Provide Insight into the Miocene History of Eurasian Temperate Shrubs
[…] gs. The cp genomes were annotated with DOGMA () to identify coding sequences and rRNAs. The tRNA sequences were also confirmed by tRNAscan-SE (). Genome maps were constructed using the Web-based tool GenomeVx (). Visualization of the alignment of chloroplast sequences was conducted with mVISTA, in which O. europaea was used as a reference sequence. Repetitive sequences were identified using REPute […]
Chloroplast genomes of Byrsonima species (Malpighiaceae): comparative analysis and screening of high divergence sequences
[…] ge_Analysis).Automatic annotation of B. coccolobifolia and B. crassifolia chloroplast genomes were generated by CpGAVAS and a circular representation of both sequences was drawn using the online tool GenomeVX. The draft annotations given by CpGAVAS were then manually corrected using the Artemis software and other plastid genomes for comparison. The complete chloroplast genomes of B. coccolobifolia […]
Method for the Identification of Taxon Specific k mers from Chloroplast Genome: A Case Study on Tomato Plant (Solanum lycopersicum)
[…] n-specific k-mers in the chloroplast genome were found using the S. lycopersicum chloroplast sequence NC_007898.3 using Python scripts. A physical map of the tomato plant plastome was drawn using the GenomeVX software (). […]
The complete chloroplast genome sequence of Asian Palmyra palm (Borassus flabellifer)
[…] epth coverage, and eight contigs covering 92% of the entire cp genome was obtained. Specific PCR amplification and sequencing were performed to fill the missing gaps. The genome map was then drawn by GenomeVx [].The circular double-stranded DNA of the complete B. flabellifer cp genome is 160,021 bp in length (Fig. , GenBank Accession Number: KP_901247). It has a typical quadripartite structure com […]
The Complete Mitogenome of the Wood Feeding Cockroach Cryptocercus meridianus (Blattodea: Cryptocercidae) and Its Phylogenetic Relationship among Cockroach Families
[…] , with an asymmetric nucleotide composition (45.20% A, 16.06% C, 9.74% G, and 29.00% T) and an AT bias (74.2%) (). The circular map of the C. meridianus mitogenome is shown in , drawn by the software GenomeVx []. AT content of the C. meridianus mitogenome (74.2%) is slightly higher than that of C. relictus (73.5%) and slightly lower than in C. kyebangensis (74.4%). Similar to other insects, it is […]
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