GAM-NGS specifications

Unique identifier:
OMICS_09315
Software type:
Package/Module
Restrictions to use:
None
Operating system:
Unix/Linux
Computer skills:
Advanced
Requirements:
GCC, cmake, zlib, boost librarie, google-sparse-hash
Name:
Genomic Assemblies Merger for Next Generation Sequencing
Interface:
Command line interface
Input data:
GAM-NGS requires as input two assemblies and a SAM-compatible alignment for each input read library and each assembly. GAM-NGS can also work with assemblies obtained using different datasets, as long as the set of reads aligned on the assemblies is the same.
Programming languages:
C++
Stability:
Stable
Maintained:
Yes

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GAM-NGS support

Documentation

Maintainer

  • Riccardo Vicedomini <>

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Publications

Institution(s)

Department of Mathematics and Computer Science, University of Udine, Udine, Italy; IGA, Institute of Applied Genomics, Udine, Italy; KTH Royal Institute of Technology, Science for Life Laboratory, School of Computer Science and Communication, Solna, Sweden; Swedish e-Science Research Centre, Department of Computer Science and Numerical Analysis, Stockholm University, Solna, Sweden

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