GAM-NGS specifications


Unique identifier OMICS_09315
Alternative name Genomic Assemblies Merger for Next Generation Sequencing
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data GAM-NGS requires as input two assemblies and a SAM-compatible alignment for each input read library and each assembly. GAM-NGS can also work with assemblies obtained using different datasets, as long as the set of reads aligned on the assemblies is the same.
Operating system Unix/Linux
Programming languages C++
Computer skills Advanced
Stability Stable
Requirements GCC, cmake, zlib, boost librarie, google-sparse-hash
Maintained Yes


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  • person_outline Riccardo Vicedomini <>

GAM-NGS article

GAM-NGS institution(s)
Department of Mathematics and Computer Science, University of Udine, Udine, Italy; IGA, Institute of Applied Genomics, Udine, Italy; KTH Royal Institute of Technology, Science for Life Laboratory, School of Computer Science and Communication, Solna, Sweden; Swedish e-Science Research Centre, Department of Computer Science and Numerical Analysis, Stockholm University, Solna, Sweden

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