- Unique identifier:
- Software type:
- Restrictions to use:
- Programming languages:
- Java, Perl
- Genomic Loci AssociatioN and Enrichment Tool
- Command line interface, Graphical user interface
- Operating system:
- Unix/Linux, Mac OS, Windows
- Computer skills:
- Burçak Otlu <>
- Oznur Tastan <>
No open topic.
(Otlu et al., 2017)
GLANET: Genomic Loci ANnotation and Enrichment Tool.
Department of Computer Engineering, Middle East Technical University, Ankara, Turkey; Department of Computer Engineering, Bilkent University, Ankara, Turkey; Department of Statistics, Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, WI, USA
Supported by TÜBITAK, 2211-C PhD Scholarship, Bilim Akademisi - The Science Academy, Turkey under the BAGEP program and L’Oreal-UNESCO under the UNESCO-L’OREAL National Fellowships Programme for Young Women in Life Sciences.
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GLANET is both a desktop and command line application.
GLANET provides annotation and enrichment analysis for varying length of genomic intervals with respect to a rich annotation library.
GLANET adjusts for genomic biases such as GC content and mappability in its sampling based enrichment analysis which reduces false positives.
GLANET allows user to extend its annotation library with user defimed gene sets and user defined genomic intervals.
GLANET enables Regulatory Sequence Analysis for overlapping SNPs and Transcription Factors pairs when the input consists of SNPs only.
GLANET analyses gene and gene sets not only in exon based but also in intron, proximal and distal region based.
Furthermore, GLANET provides joint Transcription Factor (TF) and KEGG Pathway analyses.