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Genomic Rule Object-Oriented Logic System GROOLS

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Assists biocurators in functional annotation of proteins. GROOLS is an expert system using paraconsistent logic that evaluates the completeness and the consistency of predicted functions through biological processes like metabolic pathways. It evaluates the completeness and the consistency of predicted functions through biological processes like metabolic pathways. It could be integrated in an annotation system (such as MicroScope) as a live annotation companion to guide biologists during the curation process of their genome.

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GROOLS classification

GROOLS specifications

Software type:
Application/Script
Restrictions to use:
None
Programming languages:
Java, Shell (Bash)
Computer skills:
Advanced
Maintained:
Yes
Interface:
Command line interface
Operating system:
Unix/Linux
License:
CeCILL version 2.1
Stability:
Stable

GROOLS distribution

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GROOLS support

Maintainer

Credits

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Publications

Institution(s)

CEA, Genoscope, LABGeM, Evry, France; Université d’Evry Val-d’Essonne, Evry, France; CNRS-UMR 8030, Evry, France; Université Paris-Saclay, Evry, France

Link to literature

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