Genome variation analysis software tools and databases

Genome variant analysis steps

Genome variation analysis software tools and databases

Most Recent Tools

Web app
Genewindow Genewindow

Genewindow

Permits ‘genecentric’ annotation of the human genome for laboratory and…

Permits ‘genecentric’ annotation of the human genome for laboratory and analytical work carried out at the Core Genotyping Facility (CGF) of the National Cancer Institute. Genewindow integrates…

Desktop app
Cancer Outlier… Cancer Outlier Profile Analysis

COPA Cancer Outlier Profile Analysis

Finds genes undergoing recurrent fusion in a given cancer type by finding pairs…

Finds genes undergoing recurrent fusion in a given cancer type by finding pairs of genes that have mutually exclusive outlier profiles. COPA is intended to find pairs of genes that may be involved in…

Cancer Genetic… Cancer Genetic Dependencies Database

CancerGD Cancer Genetic Dependencies Database

Integrates genotypic profiling with largescale loss-of-function genetic screens…

Integrates genotypic profiling with largescale loss-of-function genetic screens in tumor cell lines to identify such genetic dependencies. CancerGD provides tools for searching, visualizing, and…

Web app
Desktop app
ExAC browser ExAC browser

ExAC browser

A lightweight, flexible browser framework to display large population datasets…

A lightweight, flexible browser framework to display large population datasets of genetic variation. ExAC browser provides gene- and transcript-centric displays of variation, a critical view for…

Most Popular Tools

Web app
GeneTalk GeneTalk

GeneTalk

A web-based tool, knowledgebase and community for analysis and interpretation…

A web-based tool, knowledgebase and community for analysis and interpretation of human variant files. GeneTalk provides an intuitive web-based interface for geneticists that analyze human sequence…

Desktop app
Integrative Genomics… Integrative Genomics Viewer

IGV Integrative Genomics Viewer

A high-performance viewer that efficiently handles large heterogeneous data…

A high-performance viewer that efficiently handles large heterogeneous data sets, while providing a smooth and intuitive user experience at all levels of genome resolution. A key characteristic of…

Web app
In silico regulatory… In silico regulatory SNP detection

is-rSNP In silico regulatory SNP detection

Predicts whether a SNP is an rSNP. For a given SNP, and using a statistical…

Predicts whether a SNP is an rSNP. For a given SNP, and using a statistical framework, is-rSNP can successfully predict the set of TFs for which binding is affected. It provides the statistical power…

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