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Genome variation analysis software tools and databases

Genomic variants are differences in genome that make each individual unique. Some of the single nucleotide polymorphisms (SNPs), insertions, deletions, substitutions, and structural variations are linked to specific phenotypes or diseases, but most of them have still unknown…

Genome variant analysis steps

Bioinformatics tools

Biological databases

Most recent bioinformatics tools

SNP@lincTFBS
Dataset

SNP@lincTFBS

Collects data and annotation about single nucleotide polymorphisms (SNPs) in…

Collects data and annotation about single nucleotide polymorphisms (SNPs) in potential Transcription Factor Binding Sites (TFBSs) of human Large intergenic non-coding RNAs (lincRNAs). SNP@lincTFBS…

TCLP
Dataset

TCLP TRON Cell Line Portal

Allows users to search and list gene expression values from a selected cell…

Allows users to search and list gene expression values from a selected cell line. TCLP integrates a catalog of cancer cell line annotations integrating human leukocyte antigen (HLA) type, HLA…

MiSNPDb
Dataset

MiSNPDb Mangnifera Indica Single Nucleotide Polymorphism DataBase

Provides molecular markers with genome information and single nucleotide…

Provides molecular markers with genome information and single nucleotide polymorphism (SNP) data for mango. MiSNPDb has customized advance search options for haplotypes, depth and the varieties…

orchid
Desktop

orchid

Consists in tumor mutation management and machine learning analysis framework.…

Consists in tumor mutation management and machine learning analysis framework. Orchid allows users to manage, annotate, and analyze tumor mutations by integrating mutation data with popular…

Most popular analytical software and databases

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RBP-Var
Dataset

RBP-Var

Provides annotation of functional variants involved in post-transcriptional…

Provides annotation of functional variants involved in post-transcriptional interaction and regulation. RBP-Var provides a user-friendly web interface, allowing users to rapidly find whether SNVs of…

VarSome
Dataset

VarSome

A knowledge base and aggregator for human genomic variants. VarSome gives fast…

A knowledge base and aggregator for human genomic variants. VarSome gives fast access to more than 17 billion items of variant and gene annotation sourced from public databases. It also provides…

is-rSNP
Web

is-rSNP In silico regulatory SNP detection

Predicts whether a SNP is an rSNP. For a given SNP, and using a statistical…

Predicts whether a SNP is an rSNP. For a given SNP, and using a statistical framework, is-rSNP can successfully predict the set of TFs for which binding is affected. It provides the statistical power…

HYBRIDdb
Dataset

HYBRIDdb

A database which provides detailed information regarding the exploration of a…

A database which provides detailed information regarding the exploration of a specific hybrid gene of interest. HYBRIDdb encompasses the bioinformatics analysis of mRNA, EST, cDNA and can be used to…

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