GenomicConsensus statistics

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Popular tool citations

chevron_left SNP detection Assembly polishing chevron_right
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Associated diseases

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GenomicConsensus specifications

Information


Unique identifier OMICS_18568
Name GenomicConsensus
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl, Python, Shell (Bash)
License BSD 3-clause “New” or “Revised” License
Computer skills Advanced
Version 3.0.2
Stability Stable
Maintained Yes

Subtool


  • Quiver

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Versioning


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Maintainer


  • person_outline Pacific Biosciences <>

GenomicConsensus in publications

 (2)
PMCID: 5887032
PMID: 29622617
DOI: 10.1128/genomeA.00228-18

[…] to obtain a final genome sequence. pacbio read sequences were assembled with canu version 1.5. the original reads were mapped to contigs with pbalign version 0.3.1, and errors were corrected using genomicconsensus version 2.1. miseq reads were mapped using burrows-wheeler aligner (bwa) version 0.7.12, and errors were corrected using pilon version 1.22. prediction of coding regions […]

PMCID: 5614658
PMID: 28910288
DOI: 10.1371/journal.pgen.1007003

[…] 10. assemblies were polished using iterations of pbalign and quiver, which can be found at https://github.com/pacificbiosciences/pbalign/commit/cda7abb and https://github.com/pacificbiosciences/genomicconsensus/commit/43775fa. two iterations were run for xcm strain ms14003 and 3 iterations for ar81009. chromosomes were then reoriented to the dnaa gene and plasmids were reoriented to para. […]


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