Genome analysis software tools and databases

Genomics applications

Most recent bioinformatics tools

FASTM
Web

FASTM

Makes comparisons between an inputted protein and a protein sequence database.…

Makes comparisons between an inputted protein and a protein sequence database. FASTM permits to avoid issues with low complexity sequences where matches are found due to composition rather than…

EVA
Dataset

EVA European Variation Archive

Offers a collection of genetic variation data for all species. EVA is…

Offers a collection of genetic variation data for all species. EVA is searchable by study, gene, chromosomal location or Single Nucleotide Polymorphism database (dbSNP) identifier. It works in…

MoSEA
Desktop

MoSEA Motif Scan and Enrichment Analysis

Provides a pipeline that offers enrichment analysis and motif scans. MoSEA…

Provides a pipeline that offers enrichment analysis and motif scans. MoSEA permits to: (i) extract fasta sequences from given bed file coordinates, (ii) scan fasta sequences for given motifs, and…

KLTepigenome
Desktop

KLTepigenome

Allows to explore and uncover patterns of epigenomic variability and…

Allows to explore and uncover patterns of epigenomic variability and covariability. KLTepigenome uses a functional data analysis approach based on the Karhunen-Loève transform. It can outperform…

Most popular analytical software and databases

ZENBU
Web

ZENBU

Enables data exploration through "on-demand" data processing and…

Enables data exploration through "on-demand" data processing and interactive linked-visualizationsthus enabling concurrent views from the same mere primary sequence alignment data which…

MiRPara
Desktop

MiRPara

A SVM-based software tool for prediction of most probable microRNA coding…

A SVM-based software tool for prediction of most probable microRNA coding regions in genome scale sequences. miRPara is an effective tool for locating miRNAs coding regions in genome sequences and…

HAlign
Desktop

HAlign

A package of multi-platform Java software tools, which aimed at large scale…

A package of multi-platform Java software tools, which aimed at large scale multiple similar DNA/RNA sequence alignment. HAlign employs center star multiple sequence alignment strategy. The input…

EuMicrobedbLite
Dataset

EuMicrobedbLite

A light weight comprehensive genome resource and sequence analysis platform for…

A light weight comprehensive genome resource and sequence analysis platform for oomycete organisms. EuMicrobedbLite is a successor of the VBI Microbial Database (VMD) that was built using the Genome…

Curators for Genomics

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