Genome analysis software tools and databases

Genomics applications

Genome analysis software tools and databases

Most Recent Tools

Unmix
Desktop

Unmix

Performs mixture type separation on a tumor sample. Unmix approach uses…

Performs mixture type separation on a tumor sample. Unmix approach uses unmixing of tumor samples to assist in phylogenetic inference of cancer progression pathways. This unmixing method adapts the…

TO-DAG
Desktop

TO-DAG Timed Oncogenetic Directed Acyclic Graphs

Deduces from cross-sectional data of genetic alterations in tumor patients the…

Deduces from cross-sectional data of genetic alterations in tumor patients the causal dependencies and the waiting times among these genetic events. From matrices with genetic events and patient…

eShuffle
Desktop

eShuffle

Predicts statistics and distribution of crossovers for (family) DNA shuffling…

Predicts statistics and distribution of crossovers for (family) DNA shuffling under different experimental conditions (e.g., annealing temperature, fragmentation length, DNA concentration, salt…

BCFtools/csq
Desktop

BCFtools/csq

Provides a fast program for haplotype-aware consequence calling which can take…

Provides a fast program for haplotype-aware consequence calling which can take into account known phase. BCFtools/csq is part of the BCFtools package. Applied to the 1000 Genomes Project data,…

Most Popular Tools

ZENBU
Web

ZENBU

Enables data exploration through "on-demand" data processing and…

Enables data exploration through "on-demand" data processing and interactive linked-visualizationsthus enabling concurrent views from the same mere primary sequence alignment data which…

MiRPara
Desktop

MiRPara

A SVM-based software tool for prediction of most probable microRNA coding…

A SVM-based software tool for prediction of most probable microRNA coding regions in genome scale sequences. miRPara is an effective tool for locating miRNAs coding regions in genome sequences and…

HAlign
Cloud

HAlign

A package of multi-platform Java software tools, which aimed at large scale…

A package of multi-platform Java software tools, which aimed at large scale multiple similar DNA/RNA sequence alignment. HAlign employs center star multiple sequence alignment strategy. The input…

EuMicrobedbLite
Data

EuMicrobedbLite

A light weight comprehensive genome resource and sequence analysis platform for…

A light weight comprehensive genome resource and sequence analysis platform for oomycete organisms. EuMicrobedbLite is a successor of the VBI Microbial Database (VMD) that was built using the Genome…

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