Genome and epigenome software tools and databases

Genomics is an interdisciplinary field of molecular biology focusing on the DNA content of living organisms. High-throughput sequencing technologies and bioinformatics have transformed genome analysis by mapping and decrypting coding and non-coding…

Genomics & Epigenomics applications

Most recent bioinformatics tools

SIDDBASE
Dataset

SIDDBASE

Provides stress-induced DNA duplex destabilization (SIDD) profiles of microbial…

Provides stress-induced DNA duplex destabilization (SIDD) profiles of microbial genomes. SIDDBASE is a database that gives users an overview of the SIDD sites in their selected genome, and their…

SKB
Dataset

SKB Shewanella knowledgebase

Facilitates manual curation of all sequenced Shewanella genomes. SKB is a…

Facilitates manual curation of all sequenced Shewanella genomes. SKB is a multi-genome annotation environment consisting of ortholog and genome editors. It combines many independent data sources for…

SGCEdb
Dataset

SGCEdb

Accumulates information of the putative proteins. SGCEdb is a database that…

Accumulates information of the putative proteins. SGCEdb is a database that offers a variety of genomes and heterogeneous experiment methodologies. This online resource is separated into two distinct…

SeriPort
Dataset

SeriPort

Provides a common platform for all kinds of data available on sericulture in…

Provides a common platform for all kinds of data available on sericulture in the internet. SeriPort is a user-friendly and dynamic web portal to accommodate available databases as well as…

Most popular analytical software and databases

ZENBU
Web

ZENBU

Enables data exploration through "on-demand" data processing and…

Enables data exploration through "on-demand" data processing and interactive linked-visualizationsthus enabling concurrent views from the same mere primary sequence alignment data which…

MiRPara
Desktop

MiRPara

A SVM-based software tool for prediction of most probable microRNA coding…

A SVM-based software tool for prediction of most probable microRNA coding regions in genome scale sequences. miRPara is an effective tool for locating miRNAs coding regions in genome sequences and…

HAlign
Desktop

HAlign

A package of multi-platform Java software tools, which aimed at large scale…

A package of multi-platform Java software tools, which aimed at large scale multiple similar DNA/RNA sequence alignment. HAlign employs center star multiple sequence alignment strategy. The input…

EuMicrobedbLite
Dataset

EuMicrobedbLite

A light weight comprehensive genome resource and sequence analysis platform for…

A light weight comprehensive genome resource and sequence analysis platform for oomycete organisms. EuMicrobedbLite is a successor of the VBI Microbial Database (VMD) that was built using the Genome…

Curators for Genomics & Epigenomics

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