GenOO specifications

Information


Unique identifier OMICS_10445
Name GenOO
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Perl
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Documentation


Maintainer


  • person_outline Manolis Maragkakis

Publication for GenOO

GenOO citation

library_books

Sequence dependent but not sequence specific piRNA adhesion traps mRNAs to the germ plasm

2016
Nature
PMCID: 4795963
PMID: 26950602
DOI: 10.1038/nature17150

[…] Perl programming framework that we developed (M.M., P.A. and Z.M., manuscript in preparation; preprint available at: http://biorxiv.org/content/early/2015/11/03/019265). The latter framework is named GenOO and has been specifically developed for analysis of High Throughput Sequencing data. The source code for GenOO has been deposited in GitHub and can be accessed at https://github.com/genoo/. […]

GenOO institution(s)
Department of Pathology and Laboratory Medicine, Division of Neuropathology, Perelman School of Medicine, University of Pennsylvania, PA, USA
GenOO funding source(s)
NIH grants GM072777, NS072561, NS056070; a Brody Family Medical Trust Fellowship

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