genoPlotR specifications
- Unique identifier:
- OMICS_10937
- Interface:
- Command line interface
- Input data:
- GenoPlotR reads data stored in commonly used formats (EMBL, Genbank, BLAST and Mauve outputs) or in user-created tabular files and allows comparisons of one or several subsegments of a genome.
- Programming languages:
- R
- Computer skills:
- Advanced
- Stability:
- Stable
- Maintained:
- Yes
- Software type:
- Package/Module
- Restrictions to use:
- None
- Operating system:
- Unix/Linux, Mac OS, Windows
- License:
- GNU General Public License version 3.0
- Version:
- 0.8.4
- Requirements:
- ade4, grid
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genoPlotR support
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Publications
-
(Guy et al., 2010)
genoPlotR: comparative gene and genome visualization in R.
Bioinformatics.
PMID: 20624783 DOI: 10.1093/bioinformatics/btq413
Institution(s)
Department of Molecular Evolution, Uppsala University, Norbyvägen, Uppsala, Sweden
Funding source(s)
The Swedish Research Council (623-2009-743); the Swiss National Science Foundation (PBLA33-119626); the Swedish Research Council, the Göran Gustafsson Foundation and the European Union
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