genoPlotR pipeline

genoPlotR specifications


Unique identifier OMICS_10937
Name genoPlotR
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data GenoPlotR reads data stored in commonly used formats (EMBL, Genbank, BLAST and Mauve outputs) or in user-created tabular files and allows comparisons of one or several subsegments of a genome.
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0
Computer skills Advanced
Version 0.8.4
Stability Stable
Requirements ade4, grid
Maintained Yes


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Publication for genoPlotR

genoPlotR IN pipeline

PMCID: 4478539
PMID: 25850427
DOI: 10.1534/g3.114.015933

[…] hits of each search were then aligned to the non-redundant ncbi database to confirm their assignment. the genomic regions containing lin genes were aligned pairwise with megablast and displayed with genoplotr (guy et al. 2010) to examine the conserved regions between the studied sequences., growth assays with four hch isomers allowed us to compare the abilities of ll01, ll02, and ll03 to degrade […]

genoPlotR institution(s)
Department of Molecular Evolution, Uppsala University, Norbyvägen, Uppsala, Sweden
genoPlotR funding source(s)
The Swedish Research Council (623-2009-743); the Swiss National Science Foundation (PBLA33-119626); the Swedish Research Council, the Göran Gustafsson Foundation and the European Union

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