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Publication for Genopolis
Transcriptome Profiling of Wheat Seedlings following Treatment with Ultrahigh Diluted Arsenic Trioxide
[…] 's instructions. RNA concentration was determined spectrophotometrically. RNA quality controls, cRNA preparation, labeling, hybridization, washing, staining, and scanning procedures were performed by Genopolis (Department of Biotechnology and Bioscience, University of Milano-Bicocca, Milan, Italy), as described in the Affymetrix technical manual. Briefly, total RNA integrity was assessed with Agil […]
Inhibition of Class I Histone Deacetylases Unveils a Mitochondrial Signature and Enhances Oxidative Metabolism in Skeletal Muscle and Adipose Tissue
[…] f mitochondrial DNA, genomic qPCR was performed on 12S mitochondrial DNA and normalized to a nuclear Cyp7a1 sequence. Primer sequences are available upon request. Microarray analysis was performed by Genopolis (Milan, Italy). Differentially expressed genes were identified using Linear Models for Microarray Data. Chromatin immunoprecipitations (ChIPs) were performed as previously described () on C2 […]
eXframe: reusable framework for storage, analysis and visualization of genomics experiments
[…] s to archive the raw data from next generation sequencing runs . However most genomics repositories are still limited to microarrays - examples include the Stanford Microarray Database , mAdb , Genopolis , MiMiR  and several others which are compared in a useful review by Gardiner-Garden and Littlejohn .Most of these microarray databases follow the Minimum Information About a Microarra […]
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