GenoSet statistics

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Citations per year

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Popular tool citations

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Tool usage distribution map

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Associated diseases

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GenoSet specifications

Information


Unique identifier OMICS_02063
Name GenoSet
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License Artistic License version 2.0
Computer skills Advanced
Version 1.36.0
Stability Stable
Requirements
methods, stats, graphics, DNAcopy, testthat, Biostrings, BiocStyle, BSgenome, R(>=2.10), rmarkdown, knitr, SummarizedExperiment(>=1.1.6), BiocGenerics(>=0.11.3), GenomicRanges(>=1.17.19), S4Vectors(>=0.13.13), GenomeInfoDb(>=1.1.3), IRanges(>=2.5.12)
Maintained Yes

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Documentation


GenoSet in publication

PMCID: 3594263
PMID: 23324396
DOI: 10.4161/cc.23515

[…] in the supplementary materials and methods., snp/chip array-cgh data available at genentech (carfog, june 2009) for 2654 samples from 53 human tumor and cell line panels was mined using the “genoset” package from bioconductor and plotted as a heatmap to show the fraction of samples per data set containing a genome locus copy number lower than 1.5 copies. for visualization, the scale […]


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