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  4. Repetitive DNA
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A free tool to identify length variation of microsatellites from short sequence reads.

Specifications

Software type:
Package
Interface:
Command line interface
Restrictions to use:
None
Operating system:
Unix/Linux
Computer skills:
Advanced
Stability:
Stable
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Publications

  • (Tae et al., 2013) Discretized Gaussian Mixture for Genotyping of microsatellite loci containing homopolymer runs. Bioinformatics.
    PMID: 24135263

Classification

Literature

  • (Treangen and Salzberg, 2012) Repetitive DNA and next-generation sequencing: computational challenges and solutions. Nature reviews Genetics.
    PMID: 22124482
  • (Cao et al., 2014) Sequencing technologies and tools for short tandem repeat variation detection. Briefings in bioinformatics.
    PMID: 24504770

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