Genotator protocols

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Genotator specifications

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Unique identifier OMICS_19464
Name Genotator
Interface Web user interface
Restrictions to use None
Programming languages Java, Python
Computer skills Basic
Stability No
Registration required Yes
Maintained No

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This tool is not available anymore.

Publication for Genotator

Genotator in pipeline

2016
PMCID: 4754746
PMID: 26880485
DOI: 10.1038/srep21181

[…] in at least one of the male or female samples., to test whether the sex biased genes are enriched for brain diseases, we assessed their enrichment scores. disease gene sets were download from the genotator database. enrichment was tested using the hypergeometirc probability distribution functions in excel. the population universe was set to 22,327. p values were corrected by applying […]

Genotator in publications

 (12)
PMCID: 5863691
PMID: 29577078
DOI: 10.1212/NXG.0000000000000224

[…] positions (gerp_rs>3). all annotations were derived from dbnsfp3.0a. we further used a list of ad candidate genes that was collected from various gwas in the dbgap, the alzgene database, and the genotator tool to prioritize variants., we performed population stratification by using eigenstrat with default parameters. first, we merged our data with the 1000 genomes data. we chose […]

PMCID: 5704338
PMID: 29201163
DOI: 10.3892/etm.2017.5185

[…] study was to construct biomarker networks of endometriosis that integrated human protein-protein interactions and known disease-causing genes. endometriosis-associated genes were extracted from genotator and disgenet and biomarker network and pathway analyses were constructed using atbionet. of 100 input genes, 96 were strongly mapped to six major modules. the majority of the pathways […]

PMCID: 4808548
PMID: 27034906
DOI: 10.1155/2016/9589404

[…] gene sets known to be associated with several neurological disorders, namely, epilepsy, alzheimer's, parkinson's, autism, schizophrenia, bipolar disorder, and migraine, were downloaded from genotator (http://genotator.hms.harvard.edu/) [], which is an online available real-time aggregation tool that has a multiquery engine. it automatically integrates data from 11 external clinical […]

PMCID: 4647182
PMID: 26350727
DOI: 10.1177/0883073815602067

[…] relate to other diseases, we examined their enrichment in 22 disease-related gene sets. the asd–related gene set was from autdb (sfari, mindspec). the other disease-related gene sets were from the genotator database. enrichment was assessed in neurological diseases (alzheimer's, huntington's, parkinson's, and epilepsy), psychiatric disorders (schizophrenia, major depressive disorders, bipolar […]

PMCID: 4149362
PMID: 25170921
DOI: 10.1371/journal.pone.0103047

[…] 5936) shows significant difference in co-expression value in ()., having identified the topologically significant (hc and hblc) nodes, we then set out to study their association with pd. we used genotator meta-database and the text mining engine pubmed (http://www.ncbi.nlm.nih.gov/pubmed) for this purpose. 13 hubs and 15 bottlenecks in and 3 hubs and 9 bottlenecks in were found […]

Genotator institution(s)
Center for Biomedical informatics, Harvard Medical School, Boston, MA, USA; Department of Biomedical Informatics, Columbia University, New York, NY, USA
Genotator funding source(s)
Supported by NIMH under grant number 1R01MH090611-01A1 awarded.

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