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Genotator specifications

Information


Unique identifier OMICS_19464
Name Genotator
Interface Web user interface
Restrictions to use None
Programming languages Java, Python
Computer skills Basic
Stability No
Registration required Yes
Maintained No

Maintainer


This tool is not available anymore.

Publication for Genotator

Genotator citations

 (5)
library_books

Rare ABCA7 variants in 2 German families with Alzheimer disease

2018
PMCID: 5863691
PMID: 29577078
DOI: 10.1212/NXG.0000000000000224

[…] rved positions (GERP_RS>3). All annotations were derived from dbNSFP3.0a. We further used a list of AD candidate genes that was collected from various GWAS in the dbGAP, the Alzgene database, and the Genotator tool to prioritize variants. […]

library_books

Gene Prioritization by Integrated Analysis of Protein Structural and Network Topological Properties for the Protein Protein Interaction Network of Neurological Disorders

2016
PMCID: 4808548
PMID: 27034906
DOI: 10.1155/2016/9589404

[…] Gene sets known to be associated with several neurological disorders, namely, epilepsy, Alzheimer's, Parkinson's, autism, schizophrenia, bipolar disorder, and migraine, were downloaded from Genotator (http://genotator.hms.harvard.edu/) [], which is an online available real-time aggregation tool that has a multiquery engine. It automatically integrates data from 11 external clinical genet […]

library_books

A novel method for gathering and prioritizing disease candidate genes based on construction of a set of disease related MeSH® terms

2014
BMC Bioinformatics
PMCID: 4068192
PMID: 24917541
DOI: 10.1186/1471-2105-15-179

[…] ess the effect of focusing on pain field. PolySearch and LEGENDA extract knowledge data from the literature based on keyword co-occurrence analysis and automatic extraction of entity names from text. Genotator and Gene Prospector extract and prioritize candidate genes based on multiple data sources.The prioritization lists of pain or AD candidate genes identified using other tools were compiled us […]

library_books

Systems analysis of inflammatory bowel disease based on comprehensive gene information

2012
BMC Med Genet
PMCID: 3368714
PMID: 22480395
DOI: 10.1186/1471-2350-13-25

[…] features in the diseases []. They identified 154 genes not previously linked to autism. Based on this study, Wall et al. developed a web tool for comprehensive genetic annotation of diseases called "Genotator" []. Genotator provides an up-to-date and comprehensive collection of disease genes and a reliable gene-to-disease ranking for any disease. They showed that the integration of all the availa […]

library_books

Djinn Lite: a tool for customised gene transcript modelling, annotation data enrichment and exploration

2006
BMC Bioinformatics
PMCID: 1397871
PMID: 16426464
DOI: 10.1186/1471-2105-7-33

[…] A number of sophisticated and powerful sequence annotation and visualisation tools are available including ARTEMIS [], SeqVISTA [], and Genotator [,]. These tools principally focus on features that are related to segments of nucleotide sequences or small genomes, translated amino acid sequences and their annotations. Many of the featu […]

Citations

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Genotator institution(s)
Center for Biomedical informatics, Harvard Medical School, Boston, MA, USA; Department of Biomedical Informatics, Columbia University, New York, NY, USA
Genotator funding source(s)
Supported by NIMH under grant number 1R01MH090611-01A1 awarded.

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