Genotype-phenotype interaction analysis software tools and databases

Recent technological advances have expanded the breadth of available omic data, from whole-genome sequencing data, to extensive transcriptomic, methylomic and metabolomic data. A key goal of analyses of these data is the identification of effective…

Genotype-phenotype analysis applications

Genotype-phenotype interaction analysis software tools and databases

Most Recent Tools

GMAC
Desktop

GMAC Genomic Mediation analysis with Adaptive Confounding adjustment

Performs genomic mediation analysis with adaptive confounding adjustment. GMAC…

Performs genomic mediation analysis with adaptive confounding adjustment. GMAC is tailored for but not limited to genomic mediation analysis, restricting to scenarios with the presence of…

G T A T C G C T A
eQTLseq
Desktop

eQTLseq

Implements two classes of statistical models for detecting simultaneously…

Implements two classes of statistical models for detecting simultaneously multiple associations between gene expression and genomic polymorphisms in a population. eQTLseq uses paired DNA-seq and…

Crush-MDR
Server

Crush-MDR

Employs an opportunistic evolutionary strategy designed to maximally utilize an…

Employs an opportunistic evolutionary strategy designed to maximally utilize an arbitrary collection of distributed compute nodes. Crush-MDR is a multi-objective evolutionary search engine for…

xQTL Serve
Desktop

xQTL Serve

Performs quantitative trait locus (xQTL) analyses on a multi-omic dataset that…

Performs quantitative trait locus (xQTL) analyses on a multi-omic dataset that consists of RNA sequence (RNA-seq), DNA methylation, and histone acetylation (H3K9Ac ChIP-seq) data. xQTL Serve is a…

Most Popular Tools

PLINK
Desktop

PLINK

A free, open-source whole genome association analysis toolset, designed to…

A free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner. The focus of PLINK is purely on…

CADD
Desktop

CADD Combined Annotation Dependent Depletion

Scores the deleteriousness of single nucleotide variants as well as…

Scores the deleteriousness of single nucleotide variants as well as insertion/deletions variants in the human genome. CADD integrates many diverse annotations into a quantitative score. The basis of…

i-GSEA4GWAS
Web

i-GSEA4GWAS improved GSEA for GWAS

A web-based resource for analysis of GWAS data to identify pathways/gene sets…

A web-based resource for analysis of GWAS data to identify pathways/gene sets correlated to certain traits by implementing an improved Gene Set Enrichment Analysis (i-GSEA) approach. i-GSEA4GWAS aims…

PANOGA
Web

PANOGA Pathway and Network Oriented GWAS Analysis

A web server for post-genome-wide associatio analysis. PANOGA supports pathway…

A web server for post-genome-wide associatio analysis. PANOGA supports pathway and network-oriented SNP–phenotype association analysis in a single system without requiring any additional manual…

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