Genotype-phenotype interaction analysis software tools and databases

Genotype-phenotype analysis applications

Recent technological advances have expanded the breadth of available omic data, from whole-genome sequencing data, to extensive transcriptomic, methylomic and metabolomic data. A key goal of analyses of these data is the identification of effective models that predict phenotypic…

Genotype-phenotype interaction analysis software tools and databases

Most Recent Tools

Web app
Clinical Genome… Clinical Genome Resource Pathogenicity Calculator
Desktop app
FsLinkageMap FsLinkageMap

FsLinkageMap

Constructs genetic linkage maps with molecular markers generated in a full-sib…

Constructs genetic linkage maps with molecular markers generated in a full-sib family. FsLinkageMap uses a multi-locus linkage analysis which will be beneficial to construct high-density genetic…

Desktop app
REcombination… REcombination Counting and ORDering

RECORD REcombination Counting and ORDering

Orders loci on genetic linkage maps. RECORD minimizes the total number of…

Orders loci on genetic linkage maps. RECORD minimizes the total number of recombination events. The search algorithm is a heuristic procedure, combining elements of branch-and-bound with local…

FishBase FishBase

FishBase

An information system with key data on the biology of all fishes. FishBase is a…

An information system with key data on the biology of all fishes. FishBase is a global biodiversity information system on finfishes. Its initial goal to provide key facts on population dynamics for…

Most Popular Tools

Desktop app
PLINK PLINK

PLINK

A free, open-source whole genome association analysis toolset, designed to…

A free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner. The focus of PLINK is purely on…

Desktop app
Combined Annotation… Combined Annotation Dependent Depletion

CADD Combined Annotation Dependent Depletion

Scores the deleteriousness of single nucleotide variants as well as…

Scores the deleteriousness of single nucleotide variants as well as insertion/deletions variants in the human genome. CADD integrates many diverse annotations into a quantitative score. The basis of…

Web app
improved GSEA for GWAS improved GSEA for GWAS

i-GSEA4GWAS improved GSEA for GWAS

A web-based resource for analysis of GWAS data to identify pathways/gene sets…

A web-based resource for analysis of GWAS data to identify pathways/gene sets correlated to certain traits by implementing an improved Gene Set Enrichment Analysis (i-GSEA) approach. i-GSEA4GWAS aims…

Web app
Pathway and Network… Deprecated Pathway and Network Oriented GWAS Analysis

PANOGA Pathway and Network Oriented GWAS Analysis

A web server for post-genome-wide associatio analysis. PANOGA supports pathway…

A web server for post-genome-wide associatio analysis. PANOGA supports pathway and network-oriented SNP–phenotype association analysis in a single system without requiring any additional manual…

Advertisements
Join Omic Community

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.