Genovar statistics

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Genovar specifications

Information


Unique identifier OMICS_00724
Name Genovar
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Kwang Su Jung <>

Publication for Genovar

Genovar in publications

 (25)
PMCID: 5895025
PMID: 29641543
DOI: 10.1371/journal.pone.0195386

[…] or marketed products to declare. this does not alter our adherence to all the plos one policies on sharing data and materials., this is the first report to characterize the prevalence and genovar distribution of genital chlamydial infections among random heterosexual patients in the multi-ethnic saratov region, located in southeast russia., sixty-one clinical samples (cervical […]

PMCID: 5875274
PMID: 29553338
DOI: 10.3201/eid2404.171872

[…] report an hiv-infected person who was treated for lymphogranuloma venereum cervical lymphadenopathy and proctitis in croatia in 2014. infection with a variant l2b genovar of chlamydia trachomatis was detected in a cervical lymph node aspirate. a prolonged course of doxycycline was required to cure the infection., lymphogranuloma venereum (lgv) is a sexually […]

PMCID: 5810182
PMID: 29426279
DOI: 10.1186/s12864-018-4522-3

[…] on sequence similarity of the ompa variable domains 1 and 2, ompa genovars were assigned to all isolates. genovars a-c were considered to be ocular isolates, genovars d-k, urogenital isolates and genovar l, lgv isolates. genovar b is known to cause both urogenital and ocular infections., relationships among isolates were established using the genome comparator tool implemented within […]

PMCID: 5911986
PMID: 29282889
DOI: 10.1002/mbo3.549

[…] performed on the ompa sequences. one hundred and seven c. trachomatis positive samples from tunisian patients and female sex workers were analyzed using both the rhm and ompa sequencing. the overall genovar distribution obtained with both techniques was very similar. the rhm identified nine genovars, being b, d, e, f, g, h, i, j and k, where b, i, j, and k were only found in mixed infections […]

PMCID: 5761039
PMID: 29265030
DOI: 10.4103/ijmr.IJMR_1258_15

[…] have also revealed a high level of genomic variation amongst isolates of some serovars. it has been suggested that on the basis of genetic relatedness amongst isolates within the same serovar, a ‘genovar’ (more precisely, ‘genomovar’) classification may be adopted., with the increased availability of genomic sequence information, attention has been focused on exploiting this information […]


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Genovar institution(s)
Division of Bio-Medical Informatics, Center for Genome Science, Korea National Institute of Health, Osong, Korea; Division of Structural and Functional Genomics, Center for Genome Science, Korea National Institute of Health, Osong, Korea
Genovar funding source(s)
This work was supported by a grant from Korea Centers for Disease Control and Prevention (4845-301) and intramural grants from the Korea National Institute of Health (2011-N72001-00, 2008-N73002-00).

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