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An analyzer and browser for high-throughput data. GenPlay recognizes a wide variety of common genomic data formats from microarray- or sequencing-based platforms and offers a library of operations (normalization, binning, smoothing) to process raw data into visualizable tracks. GenPlay displays tracks adapted to summarize gene structure, gene expression, repeat families, CPG islands, etc. as well as custom tracks to show the results of RNA-Seq, ChIP-Seq, TimEX-Seq and single nucleotide polymorphism (SNP) analysis. GenPlay can generate statistics (minimum, maximum, SD, correlation, etc.).

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1 user review

1 user review

Eric's avatar image

Eric

Great software

Similar to IGV but much faster and a lot more functions

GenPlay forum

No open topic.

GenPlay versioning

No versioning.

GenPlay classification

GenPlay specifications

Software type:
Package
Restrictions to use:
None
Programming languages:
Java
Computer skills:
Medium
Interface:
Graphical user interface
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU General Public License version 3.0
Stability:
Stable

Publications

  • (Lajugie and Bouhassira, 2011) GenPlay, a multipurpose genome analyzer and browser. Bioinformatics.
    PMID: 21596789
  • (Lajugie et al., 2015) GenPlay Multi-Genome, a tool to compare and analyze multiple human genomes in a graphical interface. Bioinformatics.
    PMID: 25178461

GenPlay support

Maintainer

Credits

Institution(s)

Department of Cell Biology, Albert Einstein College of Medicine, New York, NY, USA

Funding source(s)

Grants C024405 and C024172 from NYSTEM

Link to literature

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