An analyzer and browser for high-throughput data. GenPlay recognizes a wide variety of common genomic data formats from microarray- or sequencing-based platforms and offers a library of operations (normalization, binning, smoothing) to process raw data into visualizable tracks. GenPlay displays tracks adapted to summarize gene structure, gene expression, repeat families, CPG islands, etc. as well as custom tracks to show the results of RNA-Seq, ChIP-Seq, TimEX-Seq and single nucleotide polymorphism (SNP) analysis. GenPlay can generate statistics (minimum, maximum, SD, correlation, etc.).

User report

Sort by:

1 user review

1 user review

Eric's avatar image

Eric

Great software

Similar to IGV but much faster and a lot more functions

GenPlay forum

No open topic.

GenPlay classification

GenPlay specifications

Software type:
Package
Restrictions to use:
None
Programming languages:
Java
Computer skills:
Medium
Interface:
Graphical user interface
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU General Public License version 3.0
Stability:
Stable

Publications

  • (Lajugie and Bouhassira, 2011) GenPlay, a multipurpose genome analyzer and browser. Bioinformatics.
    PMID: 21596789
  • (Lajugie et al., 2015) GenPlay Multi-Genome, a tool to compare and analyze multiple human genomes in a graphical interface. Bioinformatics.
    PMID: 25178461

GenPlay support

Maintainer

Credits

Institution(s)

Department of Cell Biology, Albert Einstein College of Medicine, New York, NY, USA

Funding source(s)

Grants C024405 and C024172 from NYSTEM

Link to literature

Related Genome visualization tools

Most Recent Tools

Web app
Genome Tolerance… Genome Tolerance Browser

GTB Genome Tolerance Browser

Enables users to visualize the similarities and differences between several…

Enables users to visualize the similarities and differences between several prediction algorithms. GTB is an online genome browser for visualizing the predicted tolerance of the human genome. It…

Desktop app
Blobsplorer Blobsplorer

Blobsplorer

Aids exploration and selection of subsets from Taxon-Annotated-GC-Coverage…

Aids exploration and selection of subsets from Taxon-Annotated-GC-Coverage (TAGC) annotated data. Blobsplorer is a tool for interactive visualization of assembled DNA sequence data…

Web app
myGenomeBrowser myGenomeBrowser

myGenomeBrowser

Provides biologists with a way to build, query and share their genome browsers.…

Provides biologists with a way to build, query and share their genome browsers. myGenomeBrowser is a web-based designed to give users more autonomy while simplifying and minimizing intervention from…

Web app
Desktop app
PBrowse PBrowse

PBrowse

Provides both an integrated, real-time collaborative platform and a…

Provides both an integrated, real-time collaborative platform and a comprehensive file sharing system. PBrowse allows real-time track comment and has integrated group chat to facilitate interactive…

Most Popular Tools

Web app
ZENBU ZENBU

ZENBU

Enables data exploration through "on-demand" data processing and…

Enables data exploration through "on-demand" data processing and interactive linked-visualizationsthus enabling concurrent views from the same mere primary sequence alignment data which…

TnT TnT

TnT

A set of libraries aimed at creating powerful tree- and track-based…

A set of libraries aimed at creating powerful tree- and track-based visualisations for the web. Its modularity and rich API facilitate the development of many different visualisations ranging from…

Desktop app
Integrative Genomics… Integrative Genomics Viewer

IGV Integrative Genomics Viewer

A high-performance viewer that efficiently handles large heterogeneous data…

A high-performance viewer that efficiently handles large heterogeneous data sets, while providing a smooth and intuitive user experience at all levels of genome resolution. A key characteristic of…

16 related tools

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.