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GenRGenS

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Integrates several statistical and syntactical models of random sequences and combine them. GenRGenS allows to test the relevance of given hypotheses. It is able to generate random sequences from a rational expression or a PROSITE pattern. This tool builds a description file for framed Markov chains and for hidden Markov model’s (HMM) from a reference biological sequence and some additional parameters.

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GenRGenS classification

GenRGenS specifications

Software type:
Application/Script
Restrictions to use:
None
Programming languages:
Java
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes
Interface:
Command line interface, Graphical user interface
Operating system:
Unix/Linux
License:
GNU General Public License version 3.0
Version:
2.1
Source code URL:
https://www.lri.fr/genrgens/distribution//GenRGenS2.1-src.zip

GenRGenS distribution

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GenRGenS support

Documentation

Maintainer

  • Alain Denise <>

Additional information

https://www.lri.fr/genrgens/manual/GRGs-manual-html/index.html https://www.lri.fr/genrgens/index.php?idpage=1

Credits

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Publications

Institution(s)

LRI, UMR CNRS 8623, Université Paris-Sud 11, Orsay, France; IGM, UMR CNRS 8621, Université Paris-Sud 11, Orsay, France

Funding source(s)

Partially supported by the French IMPG and ‘ACI IMPBio’ programs, and the CNRS Specific Action ‘Modélisation et Algorithmique des Structures d’ARN’.

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