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GENSCAN | Prediction of complete gene structures in human genomic DNA

Online

Identifies complete exon/intron structures of genes in genomic DNA. GENSCAN uses a homogeneous fifth order Markov model of noncoding regions and a three periodic (inhomogeneous) fifth order Markov model of coding regions. Features of the program include the capacity to predict multiple genes in a sequence, to deal with partial as well as complete genes, and to predict consistent sets of genes occurring on either or both DNA strands.

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GENSCAN classification

GENSCAN specifications

Unique identifier:
OMICS_01494
Restrictions to use:
None
Stability:
Stable
Interface:
Web user interface
Computer skills:
Basic
Maintained:
Yes

GENSCAN support

Maintainer

  • Chris Burge <>

Credits

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Publications

Institution(s)

Department of Mathematics Stanford University, Stanford CA, USA

Funding source(s)

Supported in part by National Institutes of Health grants 5R01GM 10452-33 and 5R01HG00335-10. and National Science Foundation grant DMS0403553-002.

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