GENSENG protocols

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GENSENG specifications

Information


Unique identifier OMICS_00345
Name GENSENG
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Jin P. Szatkiewicz <>

Publication for GENSENG

GENSENG in pipeline

2018
PMCID: 5831535
PMID: 29490610
DOI: 10.1186/s12859-018-2077-6

[…] windows and computed read-count in each window. we chose four window sizes (i.e., 100bps, 200bps, 500bps, and 1000bps) to generate four sets of read-count data. finally, we applied both genseng and r-genseng to each of the four read-count datasets. for r-genseng, we choose 0.99 for the sampling parameter h based on the fact that less than 1% of windows have cnv., using the implanted […]


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GENSENG in publications

 (2)
PMCID: 5831535
PMID: 29490610
DOI: 10.1186/s12859-018-2077-6

[…] rge samples the read-count data and solves the estimation problem on a smaller scale. we first theoretically validated the consistency and the variance properties of rge. we then applied rge to genseng, a glm+nb based method for detecting cnvs. we named the resulting method as “r-genseng". based on extensive evaluation using both simulated and empirical data, we concluded that r-genseng […]

PMCID: 3542381
PMID: 23326283
DOI: 10.5625/lar.2012.28.4.229

[…] microorganism treatment [,]. of these methods, steaming process has been applied to medicinal plants in order to increase therapeutic effects or improve novel functions. in the case of korean red genseng (krg), steaming process has been shown to induce increases in the levels of certain components, including ginsenosides f4, rg3, rg5, acidic polysaccharides, and phenolics, as well […]


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GENSENG institution(s)
Department of Genetics, University of North Carolina, Chapel Hill, NC, USA

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