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GenToS specifications

Information


Unique identifier OMICS_30097
Name GenToS
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java, Perl, R, Shell (Bash)
Computer skills Advanced
Stability Stable
Maintained Yes

Taxon


  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus

Versioning


No version available

Maintainer


  • person_outline Anna Kottgen

Publication for GenToS

GenToS citations

 (3)
library_books

Whole genome association analysis of treatment response in obsessive compulsive disorder

2015
Mol Psychiatry
PMCID: 5027902
PMID: 25824302
DOI: 10.1038/mp.2015.32

[…] riations with MQLS test p-values <10−4 with relatively large effect-size (odds ratios ≥1.50 for the risk allele) were reported. All statistical procedures were conducted using in-house R scripts on a GentOS based Cluster computer.SNP annotation was conducted using a web-based software SNP-NEXUS (http://www.snp-nexus.org) based on dbSNP135/hg19. Cross references to other GWAS association studies we […]

library_books

Genetic diversity in a world germplasm collection of tall fescue

2013
Genet Mol Biol
PMCID: 3715290
PMID: 23885206
DOI: 10.1590/S1415-47572013005000021

[…] previously described (; , , ,). The root tip squash method described by was used to determine chromosome number. Three plants were studied with this protocol: Ryegrass (Lolium perenne) CV. Florida (Gentos) = 2x, Festuca arundinacea subsp. Fenas (Lagsca) Arcangeli Segovia- Spain (GenBank accession number: AF532951) = 4x, and Festuca arundinacea Encore variety (Marathon II®) = 6x. These plants wer […]

library_books

Engineering Pseudomonas protegens Pf 5 for Nitrogen Fixation and its Application to Improve Plant Growth under Nitrogen Deficient Conditions

2013
PLoS One
PMCID: 3652814
PMID: 23675499
DOI: 10.1371/journal.pone.0063666

[…] For the inoculation assay, Columbia-0 Arabidopsis thaliana, Schenodorus arundinaceus (Festuca Alta Gentos), Medicago sativa (alfalfa Forage Genetics 969) and Zea mays (maize Pannar Pan6326 RRZ) seeds were surface-sterilized and vernalized for 5 days at 4°C in darkness. Then, plants were incubated i […]

Citations

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GenToS institution(s)
Department of Pediatric Genetics, Medical Center - University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany; Division of Genetic Epidemiology, Institute for Medical Biometry and Statistics, Medical Center - University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany; Institute for Medical Biometry and Statistics, Medical Center - University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany; Bioinformatics Group, Department of Computer Science, University of Freiburg, Freiburg, Germany
GenToS funding source(s)
Supported by Deutsche Forschungsgemeinschaft through grants SFB 1140, KO 3598/3-1 and SFB 992, by the Bundesministerium für Bildung und Forschung through grants 031 A538A (German Network for Bioinformatics) and FACE, and by the EU Seventh Framework Programme through grant 602300.

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