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GEO DataSets specifications

Information


Unique identifier OMICS_27149
Name GEO DataSets
Alternative name Gene Expression Omnibus DataSets
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Not allowed
Maintained Yes

Maintainer


  • person_outline GEO DataSets Team

Additional information


https://www.ncbi.nlm.nih.gov/geo/info/datasets.html

GEO DataSets citations

 (5)
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Efatutazone and T0901317 exert synergistically therapeutic effects in acquired gefitinib‐resistant lung adenocarcinoma cells

2018
PMCID: 5943475
PMID: 29573196
DOI: 10.1002/cam4.1440
call_split See protocol

[…] ssion of PPARG in lung adenocarcinoma. We used the Oncomine to query PPARG gene and filter the results by selecting lung adenocarcinoma and cancer vs. normal analysis. Three publically available GEO (Gene Expression Omnibus) datasets ( http://www.ncbi.nlm.nih.gov/geo/) GSE74575, GSE38302, GSE59239 and GSE83666 were used to analyze PPARG expression with respect to lung adenocarcinoma EGFR‐TKI‐resis […]

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OsSLI1, a Homeodomain Containing Transcription Activator, Involves Abscisic Acid Related Stress Response in Rice (Oryza sativa L.)

2014
Sci World J
PMCID: 4095735
PMID: 25089296
DOI: 10.1155/2014/809353
call_split See protocol

[…] selected with a Pearson's correlation coefficient (PCC) cutoff of 0.6 in both results. The expression changes of coexpressed genes under cold, salt, and drought stresses were investigated using GEO (Gene Expression Omnibus) datasets. For promoter analysis, the 1,000-bp upstream sequences of each coexpressed gene were analyzed by our in-home program. […]

library_books

Suppressed Expression of T Box Transcription Factors Is Involved in Senescence in Chronic Obstructive Pulmonary Disease

2012
PLoS Comput Biol
PMCID: 3400575
PMID: 22829758
DOI: 10.1371/journal.pcbi.1002597

[…] tain sirtuins), whose probable roles in COPD were indicated by altered expression in COPD lung samples ( and ).For confirmatory purposes, the entire dataset of 22,283 probe sets and 109 observations (Gene Expression Omnibus datasets GDS534 and GDS999) was also subjected to a bicluster analysis. Each bicluster consists of a subset of probe sets and a collection of the observations (conditions) with […]

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The Involvement of SMILE/TMTC3 in Endoplasmic Reticulum Stress Response

2011
PLoS One
PMCID: 3095597
PMID: 21603654
DOI: 10.1371/journal.pone.0019321
call_split See protocol

[…] egories with enrichment p-values inferior to 0.05, and categories with at least 10 genes. All microarray data is MIAME compliant and the raw data has been deposited in a MIAME compliant database, the Gene Expression Omnibus Datasets. The complete list of the probes used and expression analysis has been submitted to Gene Expression Omnibus GEO # GSE21886. […]

library_books

Network Inference Algorithms Elucidate Nrf2 Regulation of Mouse Lung Oxidative Stress

2008
PLoS Comput Biol
PMCID: 2516606
PMID: 18769717
DOI: 10.1371/journal.pcbi.1000166

[…] rom two platforms, Affymetrix GeneChip Mouse Genome 430 2.0 array and the Affymetrix Mouse Expression Set 430 (MOE430A), were collected. Of these, 224 arrays were obtained from the publicly available Gene Expression Omnibus Datasets (). These mouse lung arrays represent a variety of perturbations of the lung protein-protein interaction network, including gene knockout and ligand treatment. From an […]

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