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Geospatial inference software tools | Population genomics

Large-scale genotype datasets can help track the dispersal patterns of epidemiological outbreaks and predict the geographic origins of individuals. Such genetically-based geographic assignments also show a range of possible applications in forensics…
IsoriX
Desktop

IsoriX

Allows users to design isoscapes thanks to mixed models and uses isotopic…

Allows users to design isoscapes thanks to mixed models and uses isotopic signature to infer organisms of unknown geographic origin. IsoriX is an open R package that combines multiple functions such…

GAP
Desktop

GAP Geographic Ancestry Positioning

Relates local genetic distances between samples to their spatial distances, and…

Relates local genetic distances between samples to their spatial distances, and can be used for visually discerning population structure as well as accurately inferring the spatial origin of…

GGV
Web

GGV Geography of Genetic Variants

An interactive visualization tool for rapidly displaying the geographic…

An interactive visualization tool for rapidly displaying the geographic distribution of genetic variants. Through a REST API and dynamic front-end, the GGV browser provides maps of allele frequencies…

SPASIBA
Desktop

SPASIBA Spatial Bayesian Inference

A statistical method for geopositioning individuals of unknown origin from…

A statistical method for geopositioning individuals of unknown origin from genotypes. SPASIBA is based on a geostatistical model trained with a dataset of georeferenced genotypes. Statistical…

OriGen
Desktop

OriGen

Adapts techniques from image reconstruction that encourages smoothness without…

Adapts techniques from image reconstruction that encourages smoothness without requiring rigidly parameterized allele frequency surfaces. OriGen is model based and fast. It can infer the geographic…

IBDWS
Web
Desktop

IBDWS Isolation by Distance Web Service

Improves substantially upon the previous Isolation By Distance (IBD) program in…

Improves substantially upon the previous Isolation By Distance (IBD) program in a number of ways, including several important upgrades and bug fixes, a user-friendly interface and the production of…

SitePainter
Desktop

SitePainter

Allows investigators to create or upload pictures of their study site, loads…

Allows investigators to create or upload pictures of their study site, loads diversity analyses data and displays both diversity and taxonomy results in a spatial context. SitePainter includes:…

SCAT
Desktop

SCAT Smoothed and Continuous AssignmenTs

Implements a Bayesian statistical method for estimating allele frequencies and…

Implements a Bayesian statistical method for estimating allele frequencies and assigning samples of unknown (or known) origin across a continuous range of locations, based on genotypes collected at…

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