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GASV | A geometric approach for classification and comparison of structural variants

A tool for identifying structural variants (SVs) from paired-end sequencing data. GASV is a geometric approach for identification, classification and comparison of structural variants. This approach represents the uncertainty in measurement of a structural variant as a polygon in the plane, and identifies measurements supporting the same variant by computing intersections of polygons.

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GASV forum

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GASV classification

GASV specifications

Unique identifier:
OMICS_01352
Software type:
Package/Module
Restrictions to use:
None
Operating system:
Unix/Linux
License:
GNU General Public License version 2.0
Stability:
Stable
Name:
Geometric Analysis of Structural Variants
Interface:
Command line interface
Input format:
BAM
Programming languages:
Java
Computer skills:
Advanced
Maintained:
Yes

GASV distribution

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No versioning.

GASV support

Documentation

Credits

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Publications

Institution(s)

Division of Applied Mathematics, Center for Computational Molecular Biology, Brown University, Providence, RI, USA

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