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GeoPCA specifications

Information


Unique identifier OMICS_10164
Name GeoPCA
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Carmay Lim

Publication for GeoPCA

GeoPCA citation

library_books

Investigating DNA Binding and Conformational Variation in Temperature Sensitive p53 Cancer Mutants Using QM MM Simulations

2015
PLoS One
PMCID: 4651507
PMID: 26579714
DOI: 10.1371/journal.pone.0143065

[…] lyzed using different modules of AmberTools 1.5 []. The cpptraj and MMGBSA module of AmberTools 1.5 was used to calculate hydrogen bonding and free energy parameters for the simulations. A tool named GeoPCA, was used to perform dihedral PCA []. PCA is a multivariate statistical technique which represents a set of correlated variables as orthogonal principal components. These principal components h […]


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GeoPCA institution(s)
Institute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan

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