GeoSymbio statistics

info info

Citations per year

Number of citations per year for the bioinformatics software tool GeoSymbio
info

Tool usage distribution map

This map represents all the scientific publications referring to GeoSymbio per scientific context
info info

Associated diseases

This word cloud represents GeoSymbio usage per disease context
info

Popular tool citations

chevron_left Phylogeographic reconstruction chevron_right
Want to access the full stats & trends on this tool?

Protocols

GeoSymbio specifications

Information


Unique identifier OMICS_16527
Name GeoSymbio
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Erik Franklin

Publication for GeoSymbio

GeoSymbio citations

 (15)
call_split

Climate change promotes parasitism in a coral symbiosis

2018
PMCID: 5864192
PMID: 29379177
DOI: 10.1038/s41396-018-0046-8
call_split See protocol

[…] were aligned and trimmed using Geneious 6.0 (Biomatters Ltd). Consensus sequences were used for BLAST searches to identify the closest match in NCBI GenBank. Sequences were cross-referenced with the GeoSymbio database [].A second aliquot of the frozen cell suspension was loaded into a hemocytometer to count the total number of dividing Symbiodinium cells (doublets) relative to the total number of […]

call_split

Acceptable symbiont cell size differs among cnidarian species and may limit symbiont diversity

2017
PMCID: 5520142
PMID: 28323278
DOI: 10.1038/ismej.2017.17
call_split See protocol

[…] nces were analyzed using DNASTAR (Lasergene, Madison, WI, USA) and MacVector (Accelrys, San Diego, CA, USA) and assigned to clades by performing BLAST searches against the ITS2 sequence database from GeoSymbio () or GenBank. […]

library_books

Zooxanthellal genetic varieties in giant clams are partially determined by species intrinsic and growth related characteristics

2017
PLoS One
PMCID: 5315387
PMID: 28212387
DOI: 10.1371/journal.pone.0172285

[…] dal level using a BLAST search via the website of the DNA Data Bank of Japan (DDBJ; http://www.ddbj.nig.ac.jp/index-j.html). Then, each clade clone was further classified into ITS2 types according to GeoSymbio []. […]

library_books

Shift of symbiont communities in Acropora tenuis juveniles under heat stress

2017
PeerJ
PMCID: 5732543
PMID: 29255647
DOI: 10.7717/peerj.4055

[…] d sequence data were edited and assembled using ATSQ, version 6.0.1 (Genetyx Co., Tokyo, Japan), and identified through BLAST searches of the International Nucleotide Sequence Database (INSD) and the GeoSymbio database (), which provides alignments of Symbiodinium nrITS2 sequences that were published between 1982 and 2012. […]

library_books

Coral community response to bleaching on a highly disturbed reef

2016
Sci Rep
PMCID: 4753424
PMID: 26876092
DOI: 10.1038/srep20717

[…] Of the 20 distinct operational taxonomic units (OTU) identified, ten were assigned to subclade D1 and two to subclade C3 (both found in one colony of P. sinensis) based on the top BLAST+ hits to the GeoSymbio database. It was not possible to assign the remaining seven OTUs to subclade level but they all belonged to clade D. […]

call_split

Productivity links morphology, symbiont specificity and bleaching in the evolution of Caribbean octocoral symbioses

2015
PMCID: 4817624
PMID: 25989369
DOI: 10.1038/ismej.2015.71
call_split See protocol

[…] Following our experimental work, we obtained data from (1) GeoSymbio, a quality controlled database containing phylogenetic data on Symbiodinium isolated from diverse invertebrate hosts including gorgonians (), and (2) , the most comprehensive report on gorgo […]


Want to access the full list of citations?
GeoSymbio institution(s)
Hawaii Institute of Marine Biology, School of Ocean and Earth Science and Technology, University of Hawaii at Manoa, Kaneohe, HI, USA
GeoSymbio funding source(s)
This work was supported by the National Marine Sanctuary Program (memorandum of agreement 2005-008⁄66882), the US Environmental Protection Agency Science To Achieve Results (STAR) PhD Fellowship (FP917096 and FP917199), the US National Science Foundation (NSF) for grants through Biological Oceanography (OCE- 0752604, OCE-1041673) and the Long-Term Ecological Research (LTER) program (NSF 04-17412).

GeoSymbio reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review GeoSymbio