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Protocols

GePS specifications

Information


Unique identifier OMICS_26688
Name GePS
Alternative name Genomatix Pathway System
Interface Web user interface
Restrictions to use License purchase required
Computer skills Basic
Stability Stable
Free trial Yes
Registration required Yes
Maintained Yes

Documentation


Maintainer


  • person_outline GGA Team

Additional information


http://www.genomatix.de/online_help/help_geps/geps_help.html GePS is part of the Genomatix Software Suite.

GePS citations

 (30)
library_books

Cooperative p16 and p21 action protects female astrocytes from transformation

2018
PMCID: 5819173
PMID: 29458417
DOI: 10.1186/s40478-018-0513-5

[…] fferences in gene expression that are present in human GBM (Fig. ). Pathway enrichment analysis for the concordant differentially regulated genes was performed using a combination of KEGG pathway and Genomatix Pathway System (GePS). Relevant and important sexually dimorphic pathways identified, included cell differentiation, cell adhesion, glioblastoma, proliferation, disorders of sex development, […]

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Cerebral organoids derived from Sandhoff disease induced pluripotent stem cells exhibit impaired neurodifferentiation[S]

2018
J Lipid Res
PMCID: 5832932
PMID: 29358305
DOI: 10.1194/jlr.M081323
call_split See protocol

[…] ) of expression/enrichment level (HEXB-corrected vs. Sandhoff disease) of 1.5 and an adjusted P-value threshold ≤0.05 (Wald test) were used for the analysis.Gene ontology analysis was performed using Genomatix Pathway System (Genomatix Software Suite) through the analysis of the top 100 upregulated and the top 100 downregulated genes for HEXB-corrected organoids compared with Sandhoff disease orga […]

library_books

Decreased AGO2 and DCR1 in PBMCs from War Veterans with PTSD leads to diminished miRNA resulting in elevated inflammation

2017
PMCID: 5611749
PMID: 28850112
DOI: 10.1038/tp.2017.185

[…] whether there is a common factor that could influence expression of both AGO2 and DCR1 together. We searched for transcription factors that could interact with both AGO2 and DCR1 promoters, using the Genomatix Pathway System tool available with Illumina. As shown in , respectively, STAT3 was predicted to interact with both AGO2 and DCR1 promoters as a transcription factor. It should be noted that […]

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Interplay between H1 and HMGN epigenetically regulates OLIG1and2 expression and oligodendrocyte differentiation

2016
Nucleic Acids Res
PMCID: 5389484
PMID: 27923998
DOI: 10.1093/nar/gkw1222
call_split See protocol

[…] ange| ≥ 1.5 with P-value <0.05 was considered significantly differentially expressed between WT and DKO. Gene ontology analysis was performed using DAVID online software (https://david.ncifcrf.gov/). Genomatix Pathway System (GePS, Genomatix GmbH) was used to generate a simple network using the following criteria: organism—Mus musculus; annotation type—biological processes; subcategory—nervous sys […]

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A strong host response and lack of MYC expression are characteristic for diffuse large B cell lymphoma transformed from nodular lymphocyte predominant Hodgkin lymphoma

2016
Oncotarget
PMCID: 5342154
PMID: 27708232
DOI: 10.18632/oncotarget.12363
call_split See protocol

[…] TA System V2 (NUGEN) and hybridized onto Affymetrix Gene arrays 1.0. Gene expression data are available through the GEO database (GSE84688). Gene set characterization analysis was performed using the Genomatix Pathway System (Genomatix, Munich, Germany) at default parameters, listing all canonical pathways and biological terms with a significant enrichment of the provided input genes. Gene set enr […]

library_books

Expression based GWAS identifies variants, gene interactions and key regulators affecting intramuscular fatty acid content and composition in porcine meat

2016
Sci Rep
PMCID: 4989154
PMID: 27666082
DOI: 10.1038/srep31803

[…] notated using BioMart software.The Core Analysis function included in the Ingenuity Pathway Analysis software (IPA 4.0, Ingenuity Systems Inc., http://www.ingenuity.com; Accessed 8 July 2015) and the Genomatix Pathway System (GePS) (Release 2.8.0) in the Genomatix software suite (Genomatix Software GmbH; Munich, Germany; available at: http://www.genomatix.de; accessed 8 October 2015) were used to […]

Citations

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GePS institution(s)
Intrexon Bioinformatics Germany GmbH, Munich, Germany

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