GeSeq statistics

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Citations per year

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Popular tool citations

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Tool usage distribution map

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Associated diseases

Associated diseases

GeSeq specifications

Information


Unique identifier OMICS_18351
Name GeSeq
Interface Web user interface
Restrictions to use None
Input data Some protein-coding nucleic acids, or some non-protein-coding nucleic acids.
Input format FASTA, GenBank
Programming languages Java, Javascript
Computer skills Basic
Stability Stable

Documentation


Maintainer


This tool is not maintained anymore.

Publication for GeSeq

GeSeq in publications

 (2)
PMCID: 4987112
PMID: 27358425
DOI: 10.1093/gbe/evw147

[…] using clc genomics workbench v. 8.5.1 (http://www.clcbio.com) and geneious v. 8.1.6 (biomatters, http://www.geneious.com/). annotations of the plastome and chondriome were performed with dogma and geseq (http://dogma.ccbb.utexas.edu, https://chlorobox.mpimp-golm.mpg.de/geseq-app.html)., we selected markers from all three genomic compartments for an angiosperm-wide taxon sampling, with special […]

PMCID: 3208482
PMID: 22011414
DOI: 10.1186/1756-0500-4-426

[…] file , table s1) or resqmi (see: additional file , table s2), where approx. 2% of the remaining n-call stretches were ≥5 bases for both re-analyses. interestingly, the two longest stretches from the geseq analysis (e.g. 20 and 18 bases) remained following resqmi or sprofiler re-analyses. visual inspection of figure suggested that each sample may have hundreds of single base n-calls, […]


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GeSeq institution(s)
Max-Planck-Institut fur Molekulare Pflanzenphysiologie, Potsdam-Golm, Germany
GeSeq funding source(s)
Supported by grants of the German Science Foundation (DFG), the Human Frontier Science Program and by the Max Planck Society.

GeSeq review

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Mahmoud Magdy Elmosallamy's avatar image No country

Mahmoud Magdy Elmosallamy

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Web
Very useful with many options... very user=friendly interface...