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GeSeq

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Generates high-quality annotations in a default mode using a curated reference gene set. GeSeq enables user to upload proprietary, most up to-date or novel feature-containing reference sets. This tool urges user to curate gene annotations that failed or are particularly tricky as well as tiny exons or rapidly evolving genes. It can show independent annotations by the best-matching reference sequences and its corresponding profile Hidden Markov Model (HMM) hit or third party tRNA annotators.

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1 user review

1 user review

Mahmoud Magdy Elmosallamy's avatar image

Mahmoud Magdy Elmosallamy

Very useful with many options... very user=friendly interface...

GeSeq forum

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GeSeq classification

GeSeq specifications

Interface:
Web user interface
Input data:
Some protein-coding nucleic acids, or some non-protein-coding nucleic acids.
Programming languages:
Java, Javascript
Stability:
Stable
Restrictions to use:
None
Input format:
FASTA, GenBank
Computer skills:
Basic

GeSeq support

Documentation

Maintainer

This tool is not maintained anymore.

Credits

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Publications

Institution(s)

Max-Planck-Institut fur Molekulare Pflanzenphysiologie, Potsdam-Golm, Germany

Funding source(s)

Supported by grants of the German Science Foundation (DFG), the Human Frontier Science Program and by the Max Planck Society.

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.