GET_PHYLOMARKERS statistics
GET_PHYLOMARKERS specifications
Information
Unique identifier | OMICS_28334 |
---|---|
Name | GET_PHYLOMARKERS |
Software type | Application/Script |
Interface | Command line interface |
Restrictions to use | None |
Operating system | Unix/Linux, Mac OS, Windows |
Programming languages | R, Shell (Bash) |
License | GNU General Public License version 3.0 |
Computer skills | Advanced |
Version | 1.2.6 |
Stability | Stable |
Maintained | Yes |
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Maintainer
- person_outline Pablo Vinuesa <>
Additional information
https://github.com/vinuesa/get_phylomarkers/blob/master/docs/GET_PHYLOMARKERS_manual.html
Publication for GET_PHYLOMARKERS
GET_PHYLOMARKERS in publication
PMCID: 5938378
PMID: 29765358
DOI: 10.3389/fmicb.2018.00771
[…] reconstruction. these, if undetected, can result in erroneous or biased estimates, particularly when estimating species trees from concatenated datasets. to deal with these problems, we developed get_phylomarkers, a pipeline designed to identify high-quality markers to estimate robust genome phylogenies from the orthologous clusters, or the pan-genome matrix (pgm), computed by get_homologues. […]
GET_PHYLOMARKERS institution(s)
Centro de Ciencias Genómicas, Universidad Nacional Autónoma de México, Cuernavaca, Morelos, Mexico; Estación Experimental de Aula Dei - Consejo Superior de Investigaciones Científicas, Zaragoza, Spain; Fundación ARAID, Zaragoza, Spain
GET_PHYLOMARKERS funding source(s)
Supported by DGAPA/PAPIIT-UNAM (grants IN201806-2, IN211814 and IN206318) and CONACyT-México (grants P1-60071, 179133 and FC-2105-2-879), as well as the Fundación ARAID, Consejo Superior de Investigaciones Científicas (grant 200720I038 and Spanish MINECO (AGL2013-48756-R).
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