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GFA file manipulation software tools | High-throughput sequencing data analysis

The "Graphical Fragment Assembly" (GFA) is an emerging format for the representation of sequence assembly graphs, which can be adopted by both de Bruijn graph- and string graph-based assemblers.Source text:(Gonnella and Kurtz, 2016) RGFA: powerful…
G T A T C G C T A
GfaPy
Desktop

GfaPy

Permits to create, parse, edit and writ Graphical Fragment Assembly (GFA) 1 and…

Permits to create, parse, edit and writ Graphical Fragment Assembly (GFA) 1 and GFA 2 files. GfaPy provides a complete interface to parse files in the GFA formats. It can be modified to incorporate…

G T A T C G C T A
RGFA
Desktop

RGFA

Allows to parse, edit and write Graphical Fragment Assembly (GFA) files,…

Allows to parse, edit and write Graphical Fragment Assembly (GFA) files, complying with the proposed standard. RGFA permits simple graph manipulation, limited to operations which do not make any…

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