gff2aplot specifications


Unique identifier OMICS_19949
Name gff2aplot
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl, Other
License GNU General Public License version 3.0
Computer skills Advanced
Version 2.0
Stability Stable
Maintained Yes


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Publication for gff2aplot

gff2aplot in publication

PMCID: 2267819
PMID: 18351802
DOI: 10.1371/journal.pbio.0060063

[…] two vit genes may be too short to provide statistical significance—vit3,—or represent spurious matches—vit2). all dot plots (also for the other species comparisons below) were generated using the gff2aplot tool []. absence of vit gene sequences outside of vit syntenic regions was confirmed using tblastn against the entire genomic sequence., to identify tammar wallaby vit region sequences, […]

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gff2aplot institution(s)
Grup de Recerca en Informàtica Biomèdica, Institut Municipal d’Investigació Mèdica (IMIM) Universitat Pompeu Fabra (UPF)—Centre de Regulació Genòmica (CRG), Barcelona, Catalonia, Spain; Freie Universität Berlin, Berlin, Germany
gff2aplot funding source(s)
Supported by a predoctoral fellowship from the ‘Instituto de Salud Carlos III (Spain)’, 99/9345; by a joint grant from the ‘German Academic Exchange Service (DAAD)’ and the ‘Ministerio de Educación y Ciencia (Spain)’ and by grant from ‘Plan Nacional de I+D (Spain)’, BIO2000-1358-C02-02.

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