gff2sequence statistics

info info

Citations per year

info

Popular tool citations

chevron_left File filtering chevron_right
info

Tool usage distribution map

Tool usage distribution map
info info

Associated diseases

Associated diseases
Want to access the full stats & trends on this tool?

gff2sequence specifications

Information


Unique identifier OMICS_22136
Name gff2sequence
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Input data a GFF (or GTF) annotation file and the relevant multifasta genome information.
Input format GFF+FASTA,GTF+FASTA
Output data Some nucleotide sequences of many genic and intergenic features.
Output format FASTA, GTF, GFF
Operating system Unix/Linux
Programming languages C++
License GNU General Public License version 2.0
Computer skills Medium
Version 0.2
Stability Stable
Requirements
Qt library
Maintained Yes

Download


sourceforge.png

Versioning


No version available

Maintainer


  • person_outline Salvatore Camiolo

Publication for gff2sequence

gff2sequence citations

 (2)
library_books

The Evolutionary Basis of Translational Accuracy in Plants

2017
PMCID: 5499143
PMID: 28533334
DOI: 10.1534/g3.117.040626

[…] these species are used when we describe interspecies comparisons., coding sequences (cds), mature mrna sequences, and protein sequences were generated by computing the annotation information using gff2sequence (). only cds beginning with a valid start codon (atg), ending with a canonical stop codon (tga, taa, or tag), and featuring full nucleotide triplets (e.g., the sequence length […]

library_books

New insights into the interplay between codon bias determinants in plants

2015
PMCID: 4675714
PMID: 26546225
DOI: 10.1093/dnares/dsv027

[…] (pv), solanum lycopersicum (sl), solanum tuberosum (st), thellungiella halophila (th) and vitis vinifera (vv)] and 2 mosses [physcomitrella patens (pp) and selaginella moellendorffii (sm)]., we used gff2sequence to identify coding sequences, proteins, introns and intergenic sequences. coding sequences featuring non-canonical bases (other than a, c, g or t), missing stop codons or incomplete […]


Want to access the full list of citations?
gff2sequence institution(s)
Dipartimento di Agraria, Università degli Studi di Sassari, Sassari, Italy

gff2sequence reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review gff2sequence