gff2sequence statistics

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Number of citations per year for the bioinformatics software tool gff2sequence
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This map represents all the scientific publications referring to gff2sequence per scientific context
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gff2sequence specifications

Information


Unique identifier OMICS_22136
Name gff2sequence
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Input data a GFF (or GTF) annotation file and the relevant multifasta genome information.
Input format GFF+FASTA,GTF+FASTA
Output data Some nucleotide sequences of many genic and intergenic features.
Output format FASTA, GTF, GFF
Operating system Unix/Linux
Programming languages C++
License GNU General Public License version 2.0
Computer skills Medium
Version 0.2
Stability Stable
Requirements
Qt library
Maintained Yes

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Versioning


No version available

Maintainer


  • person_outline Salvatore Camiolo

Publication for gff2sequence

gff2sequence citation

library_books

Living apart together: crosstalk between the core and supernumerary genomes in a fungal plant pathogen

2016
BMC Genomics
PMCID: 4994206
PMID: 27552804
DOI: 10.1186/s12864-016-2941-6

[…] found. When the proteins encoded by genes in the supernumerary genome were queried against those from the core genome, 104 hits were obtained. These were formatted for Circos visualization. Using the gff2sequence tool [] the 104 genes in the supernumerary genome and their 44 paralogs on the core chromosomes were extracted, including 500 bp up- and downstream. These sequences were aligned all-vs-al […]


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gff2sequence institution(s)
Dipartimento di Agraria, Università degli Studi di Sassari, Sassari, Italy

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