GGDC pipeline

GGDC specifications

Information


Unique identifier OMICS_17873
Name GGDC
Alternative name Genome-To-Genome Distance Calculator
Interface Web user interface
Restrictions to use None
Input format FASTA format
Computer skills Basic
Version 2.1
Stability Stable
Maintained Yes

Maintainer


  • person_outline Markus Goker <>

Publications for Genome-To-Genome Distance Calculator

GGDC IN pipelines

 (2)
2013
PMCID: 3679898
PMID: 23705883
DOI: 10.1186/1471-2180-13-118

[…] has homologs existing in other genomes, we used the genomic blast tool of the ncbi [68] with the tblastn (search translated nucleotide database using a protein query) algorithm for searching., the genome-to-genome distance calculator [69] was used for genome-based species delineation as described [70]. this system calculates dna-dna similarity values by comparing the genomes to obtain […]

2013
PMCID: 3772148
PMID: 24029764
DOI: 10.1128/genomeA.00726-13

[…] region, as was also shown for the t. pendens strain hrk5 genome (3). forty-three trna genes and 1,896 protein-coding sequences were found. in silico genome-genome hybridization performed using the ggdc 2.0 algorithm (11) revealed a 0% probability that strain 1910bt and t. pendens strain hrk5 (= strain hvv3t) represent the same species. based on this evidence, we assume that strain 1910bt […]

GGDC institution(s)
Leibniz Institute DSMZ – German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany; Eberhard-Karls-Universitat, Tubingen, Germany
GGDC funding source(s)
This work was supported by Zentrum fur Datenverarbeitung, University of Tubingen.

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