Ggplot2 protocols

View Ggplot2 computational protocol

Ggplot2 statistics

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Ggplot2 specifications


Unique identifier OMICS_13680
Name Ggplot2
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 2.2.0
Stability Stable
Maintained Yes



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  • person_outline Hadley Wickhman <>

Ggplot2 in pipeline

PMCID: 5590845
PMID: 28844486
DOI: 10.1016/j.ajhg.2017.07.012

[…] a significant deviation from 50% is then calculated:0.5−1/(2−ff)=3/(2∗√(n))n=9/(4∗(0.5−1/(2−ff))ˆ2), this equation was transformed into the formulas shown in ., graphs were made using the r package ggplot2 (v.1.0.1) and microsoft excel. spiderplots, bar graphs, boxplots, and class 3 distributions were made using r v.3.1.2. heatmap displays of haplotypes were made using the gplots (v.2.17.0) r […]

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Ggplot2 in publications

PMCID: 5956746
PMID: 29780880
DOI: 10.1523/ENEURO.0426-17.2018

[…] and the average spectral powers within the δ-band (0–4 hz) and θ-band (4–12 hz) were then calculated., statistical data analysis was performed using r (version 3.2.0) including the “dplyr” () and ggplot2 () packages., assumptions for parametric tests were tested using q-q plots and residual plots. data transformations or nonparametric tests were used for two-group comparisons in which test […]

PMCID: 5956107
PMID: 29769542
DOI: 10.1038/s41598-018-25708-x

[…] test. after each fit, we excluded any data with residuals that fell 2.5 standard deviations away from the mean and refitted the trimmed models. results are visualized with the help of the ggplot2 package. contrasts were coded with dummy coding., the datasets analysed during the current study are available from the corresponding author ([email protected]) on request., publisher's […]

PMCID: 5955625
PMID: 29774236
DOI: 10.1126/sciadv.aar4536

[…] oceans samples (a robust data set of 30,000 sequences), computed in c++. for the graphical representation, statistical analyses were conducted in r (v 3.1.2) and were plotted using the r package ggplot2 (v 2.1.0) onto a reference national center for biotechnology information diatom tree ()., we thank a. e. allen and j. b. mcquaid for sharing the isip1 antibody. e.k. thanks t. coale and j. […]

PMCID: 5955966
PMID: 29769551
DOI: 10.1038/s41598-018-25601-7

[…] oc tukey tests for factors were computed with the lsmeans package. results were supplemented with bayes factors, which were computed with the bayesfactor package. plots were created with the packages ggplot2 and sjplot in r., dependent variables were pleasantness and intensity, and for the repeated trust game the return ratio (\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{ […]

PMCID: 5955976
PMID: 29769534
DOI: 10.1038/s41598-018-22493-5

[…] (cc) and molecular function (mf) terms, and a p-value < 0.05 was regarded as statistically significantly different. to add quantitative molecular information to the go terms of interest, we used ggplot2 package, which permitted the incorporation of data derived from expression level measurements with those obtained from the functional annotation enrichment analysis. in the kegg pathways […]

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Ggplot2 institution(s)
RStudio, Inc, Rice University, Houston, TX, USA

Ggplot2 review

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Arup Ghosh

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ggplot is one of the most widely used graphics creation package available in R. Almost every statistical diagram generation is possible with this single package.