ghost-tree specifications

Information


Unique identifier OMICS_11553
Name ghost-tree
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data ghost-tree takes as input (1) the Foundation Alignment (for example, the Silva 18S alignment) where sequences are annotated with taxonomy; (2) the Extension Sequence Collection (for example, unaligned ITS sequences from the UNITE database); and (3) a taxonomy map, which contains taxonomic annotations of the sequences in (2).
Operating system Unix/Linux
License BSD 3-clause “New” or “Revised” License
Computer skills Advanced
Stability Stable
Requirements MUSCLE, FastTree, SUMACLUST, ghost-tree
Maintained Yes

Versioning


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Documentation


Maintainer


  • person_outline Jennifer Fouquier <>

Publication for ghost-tree

ghost-tree institution(s)
Graduate Program in Bioinformatics and Medical Informatics, San Diego State University, San Diego, CA, USA; Center for Microbial Genetics and Genomics, Northern Arizona University, Flagstaff, AZ, USA; Department of Biological Sciences, Northern Arizona University, Flagstaff, AZ, USA; Institute for Systems Biology, Seattle, WA, USA; Department of Pediatrics, and Department of Computer Science and Engineering, University of California San Diego, San Diego, CA, USA; Department of Biology, San Diego State University, San Diego, CA, USA; San Diego State University, San Diego, CA, USA
ghost-tree funding source(s)
This work was supported in part by grants from the Alfred P. Sloan Foundation.

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