GHOSTX specifications

Unique identifier:
OMICS_08012
Interface:
Command line interface
Input data:
Some metagenome sequences produced from a DNA sequencer.
Output format:
GHOSTX outputs search results in the format similar to BLAST-tabular format.
Programming languages:
C++
License:
BSD 2-clause “Simplified” License
Version:
1.3.7
Requirements:
gcc
Software type:
Package/Module
Restrictions to use:
None
Input format:
FASTA
Operating system:
Unix/Linux
Parallelization:
CUDA
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes

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GHOSTX support

Maintainer

  • Yutaka Akiyama <>

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Publications

Institution(s)

Department of Computer Science, School of Computing, Tokyo Institute of Technology, Tokyo, Japan; Education Academy of Computational Life Sciences (ACLS), Tokyo Institute of Technology, Yokohama, Japan; Department of Computer Science, Graduate School of Information Science and Engineering, Tokyo Institute of Technology, Tokyo, Japan

Funding source(s)

Partly supported by the Strategic Programs for Innovative Research (SPIRE) Field 1 Supercomputational Life Science of the Ministry of Education, Culture, Sports, Science and Technology (MEXT) of Japan and Core Research for Evolutional Science and Technology (CREST) “Extreme Big Data” of the Japan Science and Technology Agency (JST).

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