Protocols

GI-SVM specifications

Information


Unique identifier OMICS_29852
Name GI-SVM
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Stability Stable
Maintained Yes

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Versioning


No version available

Maintainers


  • person_outline Hon Wai Leong
  • person_outline Bingxin Lu

Publication for GI-SVM

GI-SVM citation

call_split

Computational methods for predicting genomic islands in microbial genomes

2016
Comput Struct Biotechnol J
PMCID: 4887561
PMID: 27293536
DOI: 10.1016/j.csbj.2016.05.001
call_split See protocol

[…] use a sliding window to segment the whole genome sequence into a set of smaller regions. There are several representative programs, including AlienHunter , Centroid , INDeGenIUS , Design-Island and GI-SVM . The major differences among them are in: the size of the sliding window, the choice of the discrimination criterion and similarity measure, and the determination of the threshold.Both AlienHu […]

GI-SVM institution(s)
Department of Computer Science, National University of Singapore, Singapore, Singapore
GI-SVM funding source(s)
Supported in part by the National University of Singapore under AcRF grant R252-000-461-112.

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