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GiardiaDB

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A genomic database for Giardia lamblia. GiardiaDB is based on the genome of the WBC6 clinical isolate of G. lamblia. It is accessed via the standard EuPathDB web interface, providing a wide variety of tools for genomic database mining. In addition to BLAST and pattern/motif similarity searches, users can identify genes based on genomic position; common name or keyword; gene attributes (such as gene type, or number of exons); evidence of transcript expression including ESTs, SAGE tags, microarray and proteomics; gene product annotation (such as GO function, or EC enzyme number); and predicted cellular location (based on signal peptide and transmembrane predictions).

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GiardiaDB classification

  • Protists
    • Giardia lamblia
    • Trichomonas vaginalis

GiardiaDB specifications

Restrictions to use:
None
Data access:
Browse
Maintained:
Yes
Community driven:
No
User data submission:
Allowed

GiardiaDB support

Maintainer

  • Omar S. Harb <>

Credits

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Publications

Institution(s)

Center for Tropical & Emerging Global Diseases, University of Georgia, Athens, GA, USA; Penn Center for Bioinformatics, University of Pennsylvania, Philadelphia, PA, USA; Department of Medical Parasitology, New York University Langone Medical Center, New York, NY, USA; Center for Applied Genetic Technologies, University of Georgia, Athens, GA, USA; School of Medicine, University of Pennsylvania, Philadelphia, PA, USA; Department of Genetics, University of Georgia, Athens, GA, USA; Department of Computer Science, University of Georgia, Athens, GA, USA; Josephine Bay Paul Center for Comparative Molecular Biology and Evolution, Marine Biological Laboratory, Woods Hole, MA, USA; Department of Biology, University of Pennsylvania, Philadelphia, PA, USA

Funding source(s)

This tool was supported by the National Institute of Allergy and Infectious Diseases, the Department of Health and Human Services and the National Institutes of Health (HHSN266200400037C).

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