GIB

[…] LEX. All experiments were performed on a PC with Intel Core i7-2600 CPU (3.40 GHz) with 7.7 GB RAM running under the Fedora 21 with Linux kernel 3.14.2 and with Xeon E5-2667 CPU (3.30GHz×8) with 62.9 GiB memory running under the Mint 17.1 Cinnamon with Linux kernel 3.13.0-37-generic. We used the same CPU to compare the CPU time in each experiment. ILPMinPPI can be freely downloaded from http://sun […]

[…] evice of this type is the Jetson TX1, an embedded system with a peak power usage of only 18 W, yet still equipped with a 256 CUDA core “Maxwell” GPU as well as a 64 bit quad-core ARM Cortex-A57 and 4 GiB of LPDDR4 memory. Similarly to other GPU devices, the NVIDIA Jetson TX1 can be programmed using the Compute Unified Device Architecture (CUDA), meaning that a wealth of scientific software can be […]

[…] rg). The software makes use of Pyomo, to build the optimization problems and Gurobi and CPLEX to solve them.The performance of FNs remained within reasonable limits of CPU time (Intel i7, 2.00 GHz, 8 GiB, Ubuntu 14.04 LTS). Namely, the CPU time to compute one step in the glucose consumption model was 5.96 s for the wild-type cell and 44.36 s for the mutant with the state space partitioned in four […]

[…] ses and integration sites, was applied to identify patients with or without infection of any virus such as HBV, HCV, HIV including HPV16 and HPV18. The VirusSeq uses a catalogue of 26512 viruses from GIB-V (genome information broker for viruses) database and check for their presence and integration sites in paired-end RNAseq data given to it. It uses a subtraction based method similar to PATHSeq. […]

[…] Total RNA was extracted from the wild type H99 and the gib2 mutant strains that were subject to the same induction condition as for protein extraction, using the Trizol reagent (Invitrogen, CA). Following digestion with RNase-free DNase (RQ1, Promega), RN […]

[…] the instance model “r3.2xlarge”, which is one of the “Memory Optimized Instances” offered by the service. Each node has 8 virtual High Frequency Intel Xeon E5-2670 v2 Ivy Bridge 2.5GHz Processors, 61 GiB of RAM and one SSD disk, 160 GB in sizeFor the test, we configured Apache Hadoop YARN and HDFS to run on twelve nodes. Ten nodes are configured as workers, while two are used as head nodes running […]