Protocols

GIDetector specifications

Information


Unique identifier OMICS_08285
Name GIDetector
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Windows
Programming languages C#
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Dongsheng Che

Publication for GIDetector

GIDetector citations

 (2)
call_split

Computational methods for predicting genomic islands in microbial genomes

2016
Comput Struct Biotechnol J
PMCID: 4887561
PMID: 27293536
DOI: 10.1016/j.csbj.2016.05.001
call_split See protocol

[…] e refined via incorporating more precise annotations available now .Several machine learning approaches based on constructed GI datasets have been proposed, including Relevance Vector Machine (RVM) , GIDetector , and GIHunter . The major differences among them are in the choices of training datasets, GI-related features, and learning algorithms.RVM is the first machine learning method to study str […]

library_books

A Computational Framework for Tracing the Origins of Genomic Islands in Prokaryotes

2014
PMCID: 4897231
PMID: 27433520
DOI: 10.1155/2014/732857

[…] content, dinucleotide biases, codon usage, mobility genes (including transposases and integrases), and tRNA genes [, ]. Related tools using this kind of approach include AlienHunter [], Centroid [], GIDetector [], GIHunter [], PAI IDA [], and SIGI-HMM []. Comparative genome approach uses the phylogenetically close species as reference genomes and identifies subsequences that are unique in the que […]

GIDetector institution(s)
Department of Computer Science, East Stroudsburg University, East Stroudsburg, PA, USA

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