GigaDB statistics

info info

Citations per year

Number of citations per year for the bioinformatics software tool GigaDB
info

Tool usage distribution map

info info

Associated diseases

This word cloud represents GigaDB usage per disease context
info

Popular tool citations

chevron_left Dataset search databases chevron_right
Want to access the full stats & trends on this tool?

Protocols

GigaDB specifications

Information


Unique identifier OMICS_20684
Name GigaDB
Restrictions to use None
Community driven No
Data access Browse
User data submission Allowed
Content license CC0 license
Maintained Yes

Maintainers


  • person_outline Christopher Hunter
  • person_outline GigaDB Team

Publications for GigaDB

GigaDB citations

 (52)
library_books

Novel sequences, structural variations and gene presence variations of Asian cultivated rice

2018
Sci Data
PMCID: 5931083
PMID: 29718005
DOI: 10.1038/sdata.2018.79

[…] were sequenced using HiSeq 2000 platform with 500 bp DNA fragment libraries and a total of 17 trillion bases were generated. The sequencing data of the 3,024 rice accessions were freely available at GigaDB (Data Citation 1), NCBI SRA (Data Citation 2), Amazon cloud (https://aws.amazon.com/cn/public-data-sets/3000-rice-genome/) and Aliyun cloud (http://ricecloud.org/). We have previously reported […]

library_books

Genome Wide Identification, Evolutionary, and Expression Analysis of VQ Genes from Two Pyrus Species

2018
Genes
PMCID: 5924566
PMID: 29690608
DOI: 10.3390/genes9040224

[…] Predicted proteomes from P. bretschneideri (http://gigadb.org/site) and P. communis (https://www.rosaceae.org) were selected and downloaded. The VQ motif-containing genes of A. thaliana were obtained from The Arabidopsis Information Resource (TAIR) da […]

library_books

Genome Annotation Generator: a simple tool for generating and correcting WGS annotation tables for NCBI submission

2018
GigaScience
PMCID: 5887294
PMID: 29635297
DOI: 10.1093/gigascience/giy018

[…] Snapshots of the software and accompanying files are available from the GigaScience GigaDB database [], and the algorithm is also accessible in the Code Ocean cloud-based computational reproducibility platform [] https://codeocean.com/2018/02/06/genome-annotation-generator-ncbi-for-s […]

library_books

Piggy: a rapid, large scale pan genome analysis tool for intergenic regions in bacteria

2018
GigaScience
PMCID: 5890482
PMID: 29635296
DOI: 10.1093/gigascience/giy015

[…] ailable from the NCBI. The E. coli ST131 dataset was from a previously published study [] and is available at []. An archival copy of the Piggy source code is available via the GigaScience repository GigaDB []. […]

library_books

Mammalian genomic regulatory regions predicted by utilizing human genomics, transcriptomics, and epigenetics data

2018
GigaScience
PMCID: 5838836
PMID: 29618048
DOI: 10.1093/gigascience/gix136

[…] ction from the CSIRO BitBucket []. These codes can be used to perform all steps from mapping to filtering and scoring regulatory SNPs. Supporting data are also available via the GigaScience database, GigaDB [].All human databases used for prediction are publically available (). Results of predicted regulatory regions, including the Universal Datasets and the Filtered Datasets for cattle and pig, a […]

library_books

The invasive MED/Q Bemisia tabaci genome: a tale of gene loss and gene gain

2018
BMC Genomics
PMCID: 5778671
PMID: 29357812
DOI: 10.1186/s12864-018-4448-9

[…] Data from two recently published B.tabaci genomes data set, MEAM1/B, http://www.whiteflygenomics.org/cgi-bin/bta/index.cgi, v1, [] and MED/Q, http://gigadb.org/dataset/view/id/100286/token/etFfO6xzVU8Iv5Kk [] were downloaded. In order to study the syntenic blocks between these two sequences, an alignment of MED/Q and MEAD1/B draft assemblies in fa […]


Want to access the full list of citations?
GigaDB institution(s)
Department of Genetics, Stanford University, CA, USA; GigaScience team, BGI HK Research Institute, Tai Po Industrial Estate, Hong Kong, China
GigaDB funding source(s)
Supported the BGI HK Research Institute and the China National Gene Bank (CNGB).

GigaDB reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review GigaDB