GIM specifications

Information


Unique identifier OMICS_26404
Name GIM
Alternative name Gene Interaction Miner
Software type Application/Script
Interface Command line interface
Restrictions to use None
Output data A graph allowing a graphical visualization of the network of interactions between all genes queried.
Operating system Unix/Linux
Programming languages Java
Computer skills Advanced
Version 1.0
Stability Beta
Maintained Yes

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Versioning


No version available

Documentation


Maintainer


  • person_outline Alexandre Mendes

Publication for Gene Interaction Miner

GIM citation

library_books

Data and knowledge based modeling of gene regulatory networks: an update

2015
PMCID: 4817425
PMID: 27047314
DOI: 10.17179/excli2015-168

[…] dge from unstructured information such as scientific literature (Hahn et al., 2007[]). Text-mining tools as for instance the commercial Pathway Studio for mammals (Nikitin et al., 2003[]) or the free Gene Interaction Miner (Ikin et al., 2010[]) facilitate automatic knowledge extraction from literature databases. For well studied organisms this can result in a lot of interactions, for which manual […]

GIM institution(s)
School of Electrical Engineering and Computer Science, School of Electrical Engineering and Computer Science, The University of Newcastle, Callaghan, NSW, Australia; Research Centre in Bioinformatics, Biomarker Discovery and Information-Based Medicine (CIBM), School of Electrical Engineering and Computer Science, The University of Newcastle, Callaghan, NSW, Australia
GIM funding source(s)
Supported by the University of Newcastle, Australia (Competitive Independent Investigator research grant).

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