GINDEL statistics

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Citations per year

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Popular tool citations

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Tool usage distribution map

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Associated diseases

Associated diseases

GINDEL specifications


Unique identifier OMICS_13902
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A set of population sequence reads and training data.
Input format BAM
Output data Graph
Operating system Unix/Linux, Mac OS, Windows
Computer skills Advanced
Version 0.8
Stability Stable
Maintained Yes



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Publication for GINDEL

GINDEL in publications

PMCID: 4063482
PMID: 24963383
DOI: 10.1002/ece3.1062

[…] and have a certain degree of plasticity (zhang et al. ). one can determine whether a species is adapted to the environment based on needle growth conditions or morphology and anatomical structures (gindel )., differences in the number of needles in a cluster between species and artificial hybrids may influence the size of the needle crossing section, as well as related traits. thus, we used […]

PMCID: 3470593
PMID: 23077542
DOI: 10.1371/journal.pone.0047037

[…] in the cdna sequences. the indel markers were designed to detect three sequential insertion-deletion oligonucleotides in close proximity. in all, we developed 114 pairs of indel primers prefixed by “gindel” and “gtfzip”., all of the primers were designed using the software primer3 . the primers for amplifying ssr, iflp and indel markers ranged from 18 to 27 nucleotides in length. the newly […]

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GINDEL institution(s)
Department of Computer Science and Engineering, University of Connecticut, Storrs, CT, USA; The Genome Institute, Washington University School of Medicine, St Louis, MO, USA
GINDEL funding source(s)
This work was supported by National Science Foundation grant IIS-0953563.

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