Ginkgo specifications

Information


Unique identifier OMICS_11057
Name Ginkgo
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input format BED
Operating system Unix/Linux
Programming languages C++, Javascript, R
Parallelization MapReduce
License BSD 2-clause “Simplified” License
Computer skills Advanced
Version 3.0.0
Stability Stable
Requirements ctc, DNAcopy, inline, gplots, scales, plyr, ggplot2, gridExtra, fastcluster, heatmap3
Maintained Yes

Taxon


  • Invertebrates
    • Drosophila melanogaster
  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus
    • Rattus norvegicus

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Maintainer


  • person_outline Michael Schatz <>

Information


Unique identifier OMICS_11057
Name Ginkgo
Interface Web user interface
Restrictions to use None
Input format BED
Programming languages C++, Javascript, R
Computer skills Basic
Stability Stable
Maintained Yes

Taxon


  • Invertebrates
    • Drosophila melanogaster
  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus
    • Rattus norvegicus

Maintainer


  • person_outline Michael Schatz <>

Publication for Ginkgo

Ginkgo institution(s)
Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA; Department of Molecular and Cellular Biology, Stony Brook University, Stony Brook, NY, USA; Department of Cancer Biology and Genetics, Memorial Sloan Kettering Cancer Center, NY, USA
Ginkgo funding source(s)
Supported in part by the US National Institutes of Health award (R01-HG006677), the US National Science Foundation (DBI-1350041), the Cold Spring Harbor Laboratory (CSHL) Cancer Center Support Grant (5P30CA045508), and by the Watson School of Biological Sciences at CSHL through a Training Grant (5T32GM065094) from the US National Institutes of Health.

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