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GIS specifications


Unique identifier OMICS_24458
Name GIS
Alternative name Gene Information System
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Maintained No


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Publication for Gene Information System

GIS in publications

PMCID: 4481378
PMID: 26111882
DOI: 10.1038/srep11600

[…] conserved sc gene common in wheat and rice. after comparison, uniquely matched rice genes were retrieved from the combined dataset. agcr genes were accessed from the in-house developed cloned gene information system ( database and through literature survey (). the genome-wide mcr genes were acquired from the rice genome […]

PMCID: 3765203
PMID: 24039848
DOI: 10.1371/journal.pone.0073011

[…] pathway analysis tool (ingenuity systems, redwood city, ca) was used to analyze the enrichment of biological functions in the signature genes, while the gene set annotator in the merck, target and gene information system was used to identify enriched go terms. the p values were calculated by using the hypergeometric distribution and the e values from the bonferroni-adjusted p values., […]

PMCID: 3247273
PMID: 22216330
DOI: 10.1371/journal.pone.0029610

[…] known biological processes described in genego or ingenuity. significance of the overlaps between the lists was assessed using bonferroni-corrected p-values , using merck's proprietary target and gene information system., throughout this work we adopted the term biomarker to refer to a metagene together with associated score that quantifies it in each brain tissue sample. the biomarker score […]

PMCID: 3091867
PMID: 21573008
DOI: 10.1371/journal.pone.0019633

[…] author employs a protein dictionary, part-of-speech rules and word patterns to extract information on protein-protein interaction from scientific literature. these patterns are manually established. gene information system (gis) is a biomedical text mining system that can retrieve gene-related information from pubmed . in the second phase of gis, called relation prediction, the authors predict […]

PMCID: 3026527
DOI: 10.1186/1743-8454-7-S1-S48

[…] analyzed using one way anova to identify the gene sets of greatest significance. these sets were then analyzed further for biological enrichment using individual (ingenuity) and combined (target and gene information system) pathway tools., differences on the level of gene expression were seen in the choroid plexuses of braak & braak v-vi ad patients when compared to both the normal […]

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GIS institution(s)
Department of Computer Science and Information Engineering, National Cheng Kung University, Tainan, Taiwan, ROC

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