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Citations per year

Number of citations per year for the bioinformatics software tool GIS

Tool usage distribution map

This map represents all the scientific publications referring to GIS per scientific context
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GIS specifications


Unique identifier OMICS_24458
Name GIS
Alternative name Gene Information System
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Maintained No


No version available


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Publication for Gene Information System

GIS citations


Echinobase: an expanding resource for echinoderm genomic information

PMCID: 5737241
PMID: 29220460
DOI: 10.1093/database/bax074

[…] ID, common name or gene name. The SPU ID of each hit links to a gene information page. Since S. purpuratus is more widely used for molecular biology research compared to other echinoderm species, its gene information system is much more extensive. Included here are data from a variety of high throughput experiments such as RNA-seq transcriptome measurements (), whole embryo temporal expression fro […]


Single copy gene based 50 K SNP chip for genetic studies and molecular breeding in rice

Sci Rep
PMCID: 4481378
PMID: 26111882
DOI: 10.1038/srep11600

[…] eported conserved SC gene common in wheat and rice. After comparison, uniquely matched rice genes were retrieved from the combined dataset. AGCR genes were accessed from the in-house developed Cloned Gene Information System ( database and through literature survey (). The genome-wide MCR genes were acquired from the Rice Genome Annotation […]


Downstream Signaling Pathways in Mouse Adipose Tissues Following Acute In Vivo Administration of Fibroblast Growth Factor 21

PLoS One
PMCID: 3765203
PMID: 24039848
DOI: 10.1371/journal.pone.0073011

[…] ty Pathway Analysis tool (Ingenuity Systems, Redwood City, CA) was used to analyze the enrichment of biological functions in the signature genes, while the Gene Set Annotator in the Merck, Target and Gene Information System was used to identify enriched GO terms. The p values were calculated by using the hypergeometric distribution and the E values from the Bonferroni-adjusted p values.All other r […]


Molecular Insights into the Pathogenesis of Alzheimer's Disease and Its Relationship to Normal Aging

PLoS One
PMCID: 3247273
PMID: 22216330
DOI: 10.1371/journal.pone.0029610

[…] ith known biological processes described in GeneGo or Ingenuity. Significance of the overlaps between the lists was assessed using Bonferroni-corrected p-values , using Merck's proprietary Target and Gene Information system. […]


Using Unsupervised Patterns to Extract Gene Regulation Relationships for Network Construction

PLoS One
PMCID: 3091867
PMID: 21573008
DOI: 10.1371/journal.pone.0019633

[…] author employs a protein dictionary, part-of-speech rules and word patterns to extract information on protein-protein interaction from scientific literature. These patterns are manually established. Gene Information System (GIS) is a biomedical text mining system that can retrieve gene-related information from PubMed . In the second phase of GIS, called relation prediction, the authors predict th […]

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GIS institution(s)
Department of Computer Science and Information Engineering, National Cheng Kung University, Tainan, Taiwan, ROC

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