GISSD specifications

Information


Unique identifier OMICS_15450
Name GISSD
Alternative name Group I Intron Sequence and Structure Database
Restrictions to use None
Database management system MySQL
Community driven No
Data access File download, Browse
User data submission Not allowed
Maintained Yes

Documentation


Maintainer


  • person_outline Yi Zhang

Publication for Group I Intron Sequence and Structure Database

GISSD citations

 (2)
library_books

Analysis of the Mitochondrial Genome in Hypomyces aurantius Reveals a Novel Twintron Complex in Fungi

2016
Int J Mol Sci
PMCID: 4964425
PMID: 27376282
DOI: 10.3390/ijms17071049

[…] (the second intron of cox3) were predicted using the program INFERNAL [] by aligning with published group I introns [,,,]. Structure alignment data for most existing group I introns was available in GISSD (Group I intron structural alignment database) []. Key stem-loop structure elements were identified using the online program Mfold [], and final secondary structures were drawn using CorelDraw™ […]

call_split

Molecular Phylogeny of the Cyrtophorid Ciliates (Protozoa, Ciliophora, Phyllopharyngea)

2012
PLoS One
PMCID: 3299757
PMID: 22427988
DOI: 10.1371/journal.pone.0033198
call_split See protocol

[…] n the SS rRNA sequence of Aegyriana oliva were identified by the alignment of several intron-less cyrtophorian ciliates using CLUSTAL W 1.83 . The secondary structure of introns were predicted by the Group I Intron Sequence and Structure Database (GISSD) by using the covariance model (CM) of the seed alignment of IC1 and IE introns in the package INFERNAL V0.81 (http://infernal.janelia.org/). […]

GISSD institution(s)
State Key Laboratory of Virology, College of Life Sciences, Wuhan University, Wuhan, Hubei, China; LRI, UMR CNRS 8623, Université Paris-Sud 11, Orsay, France
GISSD funding source(s)
This work is supported by the National Natural Science Foundation of China (30330170 and 90608025) and by the National Basic Research Program of China (2005CB724604).

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