gitter specifications

Information


Unique identifier OMICS_18030
Name gitter
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data An image.
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU Lesser General Public License version 3.0
Computer skills Advanced
Version 1.1.1
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Omar Wagih <>

Additional information


Manual: https://cran.r-project.org/web/packages/gitter/gitter.pdf

Publication for gitter

gitter in publications

 (95)
PMCID: 5915386
PMID: 29691392
DOI: 10.1038/s41467-018-03910-9

[…] study. we would like to thank stefan stender for suggesting that the association between the ptv rs34358 and high cholesterol might be due to the ldl gwas variant rs17238484 in hmgcr (https://gitter.im/uk-biobank/lobby). m.a.r. and c.d. are supported by stanford university and a national institute of health center for multi- and trans-ethnic mapping of mendelian and complex diseases grant […]

PMCID: 5904101
PMID: 29666462
DOI: 10.1038/s41598-018-24484-y

[…] 2, we subjected tumours formed by snf96.2 cells in the brain of nod/scid recipient mice to histological analysis by masson’s trichrome staining for collagen fibres including collagen type i, gitter staining for reticular fibres including collagen type iii, elastica van gieson staining for elastic fibres, and alcian blue staining for acid mucosubstances and acidic mucins (fig. ). small […]

PMCID: 5895582
PMID: 29643404
DOI: 10.1038/s41598-018-23938-7

[…] marked loss of myelin (fig. ). the myelin was replaced by numerous fibrillary and gemistocytic astrocytes (fig. ). within and around the gliotic area scattered dilated myelin sheaths containing gitter cells were present, and a few scattered swollen axons were observed. minimal wallerian-like degeneration was observed in areas distant from the areas of myelin loss. lesions were predominantly […]

PMCID: 5951118
PMID: 29562287
DOI: 10.3382/ps/pey073

[…] isolated using qiaamp® blood mini kit (qiagen, valencia, ca) and sent to illumina, inc. (san diego, ca) for analysis. samples were tested for 3,072 snp evenly spaced throughout the chicken genome (gitter, ; muir et al., ; muir et al., ). snp linked to wg-2 should be homozygous in all wg-2 mutants, heterozygous in wg-2 carriers, and homozygous for the alternative allele in ucd 331.003., the 3 k […]

PMCID: 5845861
PMID: 29560271
DOI: 10.1038/s41514-018-0022-6

[…] at 30 °c, plates were scanned with the epson v700 photo scanner at a resolution of 300 dpi. size and circularity of the colonies were calculated for six biological replicates using the r package gitter. using a similar procedure, trait variation within the “sake × tecc” segregating population was estimated on 12 conditions using 3 biological replicates (tables )., high-throughput cls assays […]

gitter institution(s)
European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, UK; Donnelly Centre for Cellular and Biomolecular Research, University of Toronto, Toronto, ON, Canada

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