GLAD protocols

GLAD specifications

Information


Unique identifier OMICS_02053
Name GLAD
Alternative name Gain and Loss Analysis of DNA
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes

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Documentation


Publication for Gain and Loss Analysis of DNA

GLAD IN pipelines

 (3)
2012
PMCID: 3257270
PMID: 22253580
DOI: 10.1371/journal.pcbi.1002286

[…] the best performing methods of two in-depth comparison studies [39], [40] were applied to the arabidopsis array-cgh data set. from these eight methods, only ace [33], cbs [20], fhmm [48], and glad [32] were able to manage the huge number of array-cgh measurements. besides fhmm, also three other methods based on first-order hmms were considered for the comparison including wuhmm [56] […]

2010
PMCID: 2891634
PMID: 20492709
DOI: 10.1186/1471-2407-10-222

[…] [15] or partek genomic suite (partek inc., st louis, mo, usa), respectively. the detection and determination of genomics events (gains, losses, amplifications and breakpoints) was performed using glad (gain and loss analysis of dna) software [16] for genechip┬« human mapping 50 k xba array, and genomic segmentation algorithm of partek genomic suite for genome-wide human snp array 6.0. single […]

2010
PMCID: 2891634
PMID: 20492709
DOI: 10.1186/1471-2407-10-222

[…] or partek genomic suite (partek inc., st louis, mo, usa), respectively. the detection and determination of genomics events (gains, losses, amplifications and breakpoints) was performed using glad (gain and loss analysis of dna) software [16] for genechip┬« human mapping 50 k xba array, and genomic segmentation algorithm of partek genomic suite for genome-wide human snp array 6.0. single […]

GLAD institution(s)
Service Bioinformatique, UMR 144 CNRS/Institut Curie, Paris, France

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