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Citations per year

Number of citations per year for the bioinformatics software tool GLASCOW

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GLASCOW specifications


Unique identifier OMICS_25336
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes


No version available


  • person_outline Tom Druet
  • person_outline Francois Guillaume

Publication for GLASCOW

GLASCOW citations


SNP and haplotype based genome wide association studies for growth, carcass, and meat quality traits in a Duroc multigenerational population

BMC Genet
PMCID: 4837538
PMID: 27094516
DOI: 10.1186/s12863-016-0368-3

[…] es (K). A compromise value of K = 20 given the simulation considered [] was used in the present study. The haplotype-based association analysis was then conducted using a linear mixed model using the GLASCOW software []. The method by GLASCOW software is composed of two steps: the residuals solved by linear mixed model without haplotype effect is firstly obtained, and the residuals are then used t […]


Genome wide next generation DNA and RNA sequencing reveals a mutation that perturbs splicing of the phosphatidylinositol glycan anchor biosynthesis class H gene (PIGH) and causes arthrogryposis in Belgian Blue cattle

BMC Genomics
PMCID: 4404575
PMID: 25895751
DOI: 10.1186/s12864-015-1528-y

[…] s from 275 Belgian Blue AI sires, obtained with the bovine HD (700 K) beadchip (Illumina, San Diego), as controls. The analysis was restricted to 34,368 SNPs shared by both arrays, and conducted with GLASCOW as previously described []. This yielded a single genome-wide significant signal (p = 10−40) on chromosome 10 (Figure A). It resulted from autozygosity of the 15 cases for a 2.2 Mb (chr10:78,4 […]


A missense mutation accelerating the gating of the lysosomal Cl−/H+ exchanger ClC 7/Ostm1 causes osteopetrosis with gingival hamartomas in cattle

PMCID: 3882054
PMID: 24159188
DOI: 10.1242/dmm.012500

[…] plotypes were reconstructed using Beagle (). DualPHASE was then used to assign haplotypes to ten hidden haplotype states (ancestral haplotypes) (). Genome-wide association mapping was performed using GLASCOW (): association between the hidden haplotype states and the phenotype was tested using a generalized linear mixed model (with a logit link function) including a polygenic effect accounting for […]

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GLASCOW institution(s)
Unit of Animal Genomics, GIGA-R and Faculty of Veterinary Medicine, University of Liège (B34), Liège, Belgium; Unit of Animal Productions, Faculty of Veterinary Medicine, University of Liège (B43), Liège, Belgium
GLASCOW funding source(s)
Supported by grants from the Walloon Ministry of Agriculture (Rilouke) and the European Union (PIGENDEF).

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