GASSST specifications


Unique identifier OMICS_00663
Alternative name Global Alignment Short Sequence Search Tool
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Two banks: A collection of DNA sequences of any length (from short EST sequence to full genome) and a collection of very short DNA sequences.
Input format FASTA
Operating system Unix/Linux, Mac OS, Windows
Programming languages C++
License CeCILL version 2.1
Computer skills Advanced
Version 1.28
Stability Stable
Source code URL
Maintained Yes


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  • person_outline Guillaume Rizk <>
  • person_outline Dominique Lavenier <>

GASSST article

GASSST institution(s)
Univ-Rennes 1/IRISA, IRISA - Symbiose Campus universitaire de Beaulieu, Rennes, France
GASSST funding source(s)
Supported by French Agence Nationale de la Recherche BioWIC (ANR-08-SEGI-005).

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